31869c7babee9471496ae9968140c368e9efe830
donnak
  Tue Jun 7 15:04:52 2011 -0700
Added lizard announcement.
diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html
index 424c38b..249a90f 100644
--- src/hg/htdocs/indexNews.html
+++ src/hg/htdocs/indexNews.html
@@ -16,59 +16,71 @@
                 <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0>
                     <TR><TH HEIGHT=3></TH></TR>
                     <TR><TD WIDTH=10></TD>
                     <TD>
                     <P>
                     To receive announcements of new genome 
                     assembly releases, new software features, updates and 
                     training seminars by email, subscribe to the
                     <A HREF="https://lists.soe.ucsc.edu/mailman/listinfo/genome-announce" 
                     TARGET=_blank>genome-announce</A> mailing list.</P>
 
             
             <!-- start news -->
 
 		    <P>
-                    <FONT FACE="courier" SIZE="3"><B>26 May 2011 - New
-Release of UCSC Genes for Mouse</B></FONT>
-		    </P>
+                    <FONT FACE="courier" SIZE="3"><B>7 June 2011 -
+Updated Lizard Browser Available</B></FONT>
 		    <P>
-		    We've released an updated set of UCSC Genes for the mm9 
-		    (NCBI Build 37) mouse Genome Browser. This version of the 
-		    gene set was generated using the same computational 
-		    pipeline as the previous mm9 UCSC Genes, but is based on 
-		    more recent GenBank data.
+		    We have released a Genome Browser for the May 2010 
+		    genome assembly of the green anole lizard, <em>Anolis 
+		    carolinensis</em> (Broad 
+		    version AnoCar2.0, UCSC version anoCar2). This assembly,
+		    which has been sequenced to 7.1X coverage, was produced by 
+		    the <A HREF="http://www.broad.mit.edu/" 
+		    TARGET=_blank>Broad Institute</A>, Cambridge, MA. 
+		    </P>
 		    <P>
-		    The new release has 55,419 total transcripts, compared with 
-		    49,409 in the previous version. The total number of canonical
-		    genes has increased from 27,389 to 28,661.
+		    Bulk downloads of the sequence and annotation data are 
+		    available via the Genome Browser
+		    <A HREF="ftp://hgdownload.cse.ucsc.edu/goldenPath/anoCar2/">FTP server</A> 
+		    or the
+		    <A HREF="http://hgdownload.cse.ucsc.edu/downloads.html#lizard">Downloads</A>
+		    page.  These data have 
+		    <A HREF="goldenPath/credits.html#lizard_use">specific
+		    conditions for use</A>.
 		    <P>
-		    Comparing the new gene set with the previous version:
-		    <UL>
-		    <LI>33,977 transcripts did not change between versions
-		    <LI>69 transcripts were not carried forward to the new version
-		    <LI>13,701 transcripts are &quot;compatible&quot; with those in the 
-		    previous set
-		    <LI>1,662 transcripts overlap with those in the previous set 
-		    </UL>
+		    We'd like to thank the Broad Institute for providing this
+		    assembly. The lizard Genome Browser and annotation
+		    tracks were produced by Hiram Clawson, Brian Raney, and 
+		    Luvina Guruvadoo. See the
+		    <A HREF="goldenPath/credits.html#lizard_credits">Credits</A>
+		    page for a detailed list of the organizations and 
+		    individuals who contributed to this release.
 		    </P>
 		    <HR>
+                    <FONT FACE="courier" SIZE="3"><B>26 May 2011 - New
+Release of UCSC Genes for Mouse:</B></FONT>
+		    We've released an updated set of UCSC Genes for the mm9 
+		    (NCBI Build 37) mouse Genome Browser. 
+		    <A HREF="goldenPath/newsarch.html#052611">Read more</A>.
+		    </P>
 
             <!-- ENCODE usability survey -->
 		    <P>
                     <FONT FACE="courier" SIZE="3"><B>1 May 2011 - ENCODE
-User's Guide and Usability Survey: </B></FONT>
+User's Guide: </B></FONT>
                   The ENCODE project has just published an overview of their ongoing large-scale
                   efforts to interpret the human genome sequence in the journal PLoS Biology.
                   <a target=_blank href="http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1001046 ">
                   A Users Guide to the Encyclopedia of DNA Elements</a>,
                   highlights the scope of data production, and provides guidance for locating 
                   and using the data.  
 		  <A HREF="goldenPath/newsarch.html#050111">Read more</A>.
 		    </P>
 
             <!-- hg19 snp132 release -->
 		    <P>
                     <FONT FACE="courier" SIZE="3"><B>18 April 2011 -
 dbSNP 132 Available for hg19: </B></FONT>
                     We are pleased to announce the release of four tracks derived from
                     <a href="http://www.ncbi.nlm.nih.gov/projects/SNP/" target=_blank>dbSNP</a>