31869c7babee9471496ae9968140c368e9efe830 donnak Tue Jun 7 15:04:52 2011 -0700 Added lizard announcement. diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 424c38b..249a90f 100644 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -16,59 +16,71 @@ <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="https://lists.soe.ucsc.edu/mailman/listinfo/genome-announce" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> <P> - <FONT FACE="courier" SIZE="3"><B>26 May 2011 - New -Release of UCSC Genes for Mouse</B></FONT> - </P> + <FONT FACE="courier" SIZE="3"><B>7 June 2011 - +Updated Lizard Browser Available</B></FONT> <P> - We've released an updated set of UCSC Genes for the mm9 - (NCBI Build 37) mouse Genome Browser. This version of the - gene set was generated using the same computational - pipeline as the previous mm9 UCSC Genes, but is based on - more recent GenBank data. + We have released a Genome Browser for the May 2010 + genome assembly of the green anole lizard, <em>Anolis + carolinensis</em> (Broad + version AnoCar2.0, UCSC version anoCar2). This assembly, + which has been sequenced to 7.1X coverage, was produced by + the <A HREF="http://www.broad.mit.edu/" + TARGET=_blank>Broad Institute</A>, Cambridge, MA. + </P> <P> - The new release has 55,419 total transcripts, compared with - 49,409 in the previous version. The total number of canonical - genes has increased from 27,389 to 28,661. + Bulk downloads of the sequence and annotation data are + available via the Genome Browser + <A HREF="ftp://hgdownload.cse.ucsc.edu/goldenPath/anoCar2/">FTP server</A> + or the + <A HREF="http://hgdownload.cse.ucsc.edu/downloads.html#lizard">Downloads</A> + page. These data have + <A HREF="goldenPath/credits.html#lizard_use">specific + conditions for use</A>. <P> - Comparing the new gene set with the previous version: - <UL> - <LI>33,977 transcripts did not change between versions - <LI>69 transcripts were not carried forward to the new version - <LI>13,701 transcripts are "compatible" with those in the - previous set - <LI>1,662 transcripts overlap with those in the previous set - </UL> + We'd like to thank the Broad Institute for providing this + assembly. The lizard Genome Browser and annotation + tracks were produced by Hiram Clawson, Brian Raney, and + Luvina Guruvadoo. See the + <A HREF="goldenPath/credits.html#lizard_credits">Credits</A> + page for a detailed list of the organizations and + individuals who contributed to this release. </P> <HR> + <FONT FACE="courier" SIZE="3"><B>26 May 2011 - New +Release of UCSC Genes for Mouse:</B></FONT> + We've released an updated set of UCSC Genes for the mm9 + (NCBI Build 37) mouse Genome Browser. + <A HREF="goldenPath/newsarch.html#052611">Read more</A>. + </P> <!-- ENCODE usability survey --> <P> <FONT FACE="courier" SIZE="3"><B>1 May 2011 - ENCODE -User's Guide and Usability Survey: </B></FONT> +User's Guide: </B></FONT> The ENCODE project has just published an overview of their ongoing large-scale efforts to interpret the human genome sequence in the journal PLoS Biology. <a target=_blank href="http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1001046 "> A Users Guide to the Encyclopedia of DNA Elements</a>, highlights the scope of data production, and provides guidance for locating and using the data. <A HREF="goldenPath/newsarch.html#050111">Read more</A>. </P> <!-- hg19 snp132 release --> <P> <FONT FACE="courier" SIZE="3"><B>18 April 2011 - dbSNP 132 Available for hg19: </B></FONT> We are pleased to announce the release of four tracks derived from <a href="http://www.ncbi.nlm.nih.gov/projects/SNP/" target=_blank>dbSNP</a>