2b21f67e5f67843fc572fde73a555f2c2aee3ed2
fanhsu
  Sun Jun 12 15:56:44 2011 -0700
Removed commented out code and minor edit of comment for hasOmimPhenotypeClass().
diff --git src/hg/hgTracks/simpleTracks.c src/hg/hgTracks/simpleTracks.c
index 392fa0e..c823773 100644
--- src/hg/hgTracks/simpleTracks.c
+++ src/hg/hgTracks/simpleTracks.c
@@ -10843,32 +10843,32 @@
     {
     dyStringAppend(dy, "; disorder(s): ");
     dyStringAppend(dy, disorders);
     }
 hFreeConn(&conn);
 return(dy->string);
 }
 
 boolean isOmimOtherClass(char *omimId)
 /* check if this omimId belongs to the "Others" phenotype class */
 
 /* NOTE: The definition of Others class is kind of tricky.
 
    The Other class is defined as:
 
-	2. does not have class 1 or 2 or 3, or 4; some may have class '-1'.
-	3. for an entry of omimId that the omimPhenotype table does not even have a row with omimId
+	1. does not have class 1 or 2 or 3, or 4; some may have class '-1'.
+	2. for an entry of omimId that the omimPhenotype table does not even have a row with omimId
 */
 {
 boolean result;
 char answer[255];
 struct sqlConnection *conn = hAllocConn(database);
 char query[256];
 safef(query,sizeof(query),
       "select phenotypeClass from omimPhenotype where omimId =%s and (phenotypeClass=1 or phenotypeClass=2 or phenotypeClass=3 or phenotypeClass=4)", omimId);
 char *ret = sqlQuickQuery(conn, query, answer, sizeof(answer));
 
 if (ret == NULL)
     {
     result = TRUE;
     }
 else
@@ -11028,39 +11028,30 @@
 lighter.b = (6*normal->b + 4*255) / 10;
 
 lightest.r = (1*normal->r + 2*255) / 3;
 lightest.g = (1*normal->g + 2*255) / 3;
 lightest.b = (1*normal->b + 2*255) / 3;
 
 
 struct sqlConnection *conn = hAllocConn(database);
 
 class1Clr = hvGfxFindColorIx(hvg, lightest.r, lightest.g, lightest.b);
 class2Clr = hvGfxFindColorIx(hvg, lighter.r, lighter.g, lighter.b);
 class3Clr = hvGfxFindColorIx(hvg, normal->r, normal->g, normal->b);
 class4Clr = hvGfxFindColorIx(hvg, 105,50,155);
 classOtherClr = hvGfxFindColorIx(hvg, 190, 190, 190);	// light gray
 
-/* last try of Brooke's suggestion, the class 1 and 2 are too bright */
-/*
-class1Clr = hvGfxFindColorIx(hvg, 125,225,115);
-class2Clr = hvGfxFindColorIx(hvg, 35,155,10);
-class3Clr = hvGfxFindColorIx(hvg, 10,60,0);
-class4Clr = hvGfxFindColorIx(hvg, 105,50,155);
-classOtherClr = hvGfxFindColorIx(hvg, 190, 190, 190);	// light gray
-*/
-
 safef(query, sizeof(query),
       "select omimId, phenotypeClass from omimPhenotype where omimId=%s order by phenotypeClass desc", el->name);
 sr = sqlMustGetResult(conn, query);
 row = sqlNextRow(sr);
 
 hFreeConn(&conn);
 
 if (row == NULL)
     {
     // set to gray if this entry does not have any disorder info
     sqlFreeResult(&sr);
     return classOtherClr;
     }
 else
     {