9cc2351f465f585965408ff48fea2ad79a1aaa91 markd Mon Jun 6 17:40:11 2011 -0700 meger of GENCODE V7 tracks diff --git src/hg/inc/genePred.h src/hg/inc/genePred.h index f721cfd..91fa14e 100644 --- src/hg/inc/genePred.h +++ src/hg/inc/genePred.h @@ -81,34 +81,30 @@ char *name2; /* Secondary name. (e.g. name of gene), or * empty if none, NULL if field not * requested */ enum cdsStatus cdsStartStat; /* Status of cdsStart annotation */ enum cdsStatus cdsEndStat; /* Status of cdsEnd annotation */ int *exonFrames; /* List of frame for each exon, or -1 * if no frame or not known. NULL if not * available. */ }; /* Standard value to use for insertMergeSize when creating genePred. * Set to 8 due to microdeletions. */ #define genePredStdInsertMergeSize 8 -#define GENEPRED_CLASS_VAR "geneClasses" -#define GENEPRED_CLASS_PREFIX "gClass_" -#define GENEPRED_CLASS_TBL "itemClassTbl" - #define GENEPRED_NUM_COLS 10 /* number of columns in a genePred */ #define GENEPREDX_NUM_COLS 15 /* max number of columns in extended genePred */ struct genePred *genePredLoad(char **row); /* Load a genePred from row fetched with select * from genePred * from database. Dispose of this with genePredFree(). */ struct genePred *genePredLoadAll(char *fileName); /* Load all genePred from whitespace-separated file. * Dispose of this with genePredFreeList(). */ struct genePred *genePredLoadAllByChar(char *fileName, char chopper); /* Load all genePred from chopper separated file. * Dispose of this with genePredFreeList(). */