9cc2351f465f585965408ff48fea2ad79a1aaa91 markd Mon Jun 6 17:40:11 2011 -0700 meger of GENCODE V7 tracks diff --git src/hg/inc/wgEncodeGencodePdb.h src/hg/inc/wgEncodeGencodePdb.h deleted file mode 100644 index b5c928a..0000000 --- src/hg/inc/wgEncodeGencodePdb.h +++ /dev/null @@ -1,62 +0,0 @@ -/* wgEncodeGencodePdb.h was originally generated by the autoSql program, which also - * generated wgEncodeGencodePdb.c and wgEncodeGencodePdb.sql. This header links the database and - * the RAM representation of objects. */ - -#ifndef WGENCODEGENCODEPDB_H -#define WGENCODEGENCODEPDB_H - -#define WGENCODEGENCODEPDB_NUM_COLS 2 - -struct wgEncodeGencodePdb -/* Gencode metadata table of associated Protein Data Bank (PDB) protein structuress */ - { - struct wgEncodeGencodePdb *next; /* Next in singly linked list. */ - char *transcriptId; /* Transcript ID for Gencode gene */ - char *PdbId; /* Protein Data Bank (PDB) ID */ - }; - -void wgEncodeGencodePdbStaticLoad(char **row, struct wgEncodeGencodePdb *ret); -/* Load a row from wgEncodeGencodePdb table into ret. The contents of ret will - * be replaced at the next call to this function. */ - -struct wgEncodeGencodePdb *wgEncodeGencodePdbLoad(char **row); -/* Load a wgEncodeGencodePdb from row fetched with select * from wgEncodeGencodePdb - * from database. Dispose of this with wgEncodeGencodePdbFree(). */ - -struct wgEncodeGencodePdb *wgEncodeGencodePdbLoadAll(char *fileName); -/* Load all wgEncodeGencodePdb from whitespace-separated file. - * Dispose of this with wgEncodeGencodePdbFreeList(). */ - -struct wgEncodeGencodePdb *wgEncodeGencodePdbLoadAllByChar(char *fileName, char chopper); -/* Load all wgEncodeGencodePdb from chopper separated file. - * Dispose of this with wgEncodeGencodePdbFreeList(). */ - -#define wgEncodeGencodePdbLoadAllByTab(a) wgEncodeGencodePdbLoadAllByChar(a, '\t'); -/* Load all wgEncodeGencodePdb from tab separated file. - * Dispose of this with wgEncodeGencodePdbFreeList(). */ - -struct wgEncodeGencodePdb *wgEncodeGencodePdbCommaIn(char **pS, struct wgEncodeGencodePdb *ret); -/* Create a wgEncodeGencodePdb out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new wgEncodeGencodePdb */ - -void wgEncodeGencodePdbFree(struct wgEncodeGencodePdb **pEl); -/* Free a single dynamically allocated wgEncodeGencodePdb such as created - * with wgEncodeGencodePdbLoad(). */ - -void wgEncodeGencodePdbFreeList(struct wgEncodeGencodePdb **pList); -/* Free a list of dynamically allocated wgEncodeGencodePdb's */ - -void wgEncodeGencodePdbOutput(struct wgEncodeGencodePdb *el, FILE *f, char sep, char lastSep); -/* Print out wgEncodeGencodePdb. Separate fields with sep. Follow last field with lastSep. */ - -#define wgEncodeGencodePdbTabOut(el,f) wgEncodeGencodePdbOutput(el,f,'\t','\n'); -/* Print out wgEncodeGencodePdb as a line in a tab-separated file. */ - -#define wgEncodeGencodePdbCommaOut(el,f) wgEncodeGencodePdbOutput(el,f,',',','); -/* Print out wgEncodeGencodePdb as a comma separated list including final comma. */ - -/* -------------------------------- End autoSql Generated Code -------------------------------- */ - -#endif /* WGENCODEGENCODEPDB_H */ -