9cc2351f465f585965408ff48fea2ad79a1aaa91 markd Mon Jun 6 17:40:11 2011 -0700 meger of GENCODE V7 tracks diff --git src/hg/inc/wgEncodeGencodeRefSeq.h src/hg/inc/wgEncodeGencodeRefSeq.h deleted file mode 100644 index d8d744d..0000000 --- src/hg/inc/wgEncodeGencodeRefSeq.h +++ /dev/null @@ -1,63 +0,0 @@ -/* wgEncodeGencodeRefSeq.h was originally generated by the autoSql program, which also - * generated wgEncodeGencodeRefSeq.c and wgEncodeGencodeRefSeq.sql. This header links the database and - * the RAM representation of objects. */ - -#ifndef WGENCODEGENCODEREFSEQ_H -#define WGENCODEGENCODEREFSEQ_H - -#define WGENCODEGENCODEREFSEQ_NUM_COLS 3 - -struct wgEncodeGencodeRefSeq -/* Gencode metadata table of associated RefSeq mRNA or non-coding RNA and peptide accessions */ - { - struct wgEncodeGencodeRefSeq *next; /* Next in singly linked list. */ - char *transcriptId; /* Transcript ID for Gencode gene */ - char *refSeqRnaId; /* RefSeq mRNA or non-coding RNA ID */ - char *refSeqPepId; /* RefSeq peptide ID for coding transcripts */ - }; - -void wgEncodeGencodeRefSeqStaticLoad(char **row, struct wgEncodeGencodeRefSeq *ret); -/* Load a row from wgEncodeGencodeRefSeq table into ret. The contents of ret will - * be replaced at the next call to this function. */ - -struct wgEncodeGencodeRefSeq *wgEncodeGencodeRefSeqLoad(char **row); -/* Load a wgEncodeGencodeRefSeq from row fetched with select * from wgEncodeGencodeRefSeq - * from database. Dispose of this with wgEncodeGencodeRefSeqFree(). */ - -struct wgEncodeGencodeRefSeq *wgEncodeGencodeRefSeqLoadAll(char *fileName); -/* Load all wgEncodeGencodeRefSeq from whitespace-separated file. - * Dispose of this with wgEncodeGencodeRefSeqFreeList(). */ - -struct wgEncodeGencodeRefSeq *wgEncodeGencodeRefSeqLoadAllByChar(char *fileName, char chopper); -/* Load all wgEncodeGencodeRefSeq from chopper separated file. - * Dispose of this with wgEncodeGencodeRefSeqFreeList(). */ - -#define wgEncodeGencodeRefSeqLoadAllByTab(a) wgEncodeGencodeRefSeqLoadAllByChar(a, '\t'); -/* Load all wgEncodeGencodeRefSeq from tab separated file. - * Dispose of this with wgEncodeGencodeRefSeqFreeList(). */ - -struct wgEncodeGencodeRefSeq *wgEncodeGencodeRefSeqCommaIn(char **pS, struct wgEncodeGencodeRefSeq *ret); -/* Create a wgEncodeGencodeRefSeq out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new wgEncodeGencodeRefSeq */ - -void wgEncodeGencodeRefSeqFree(struct wgEncodeGencodeRefSeq **pEl); -/* Free a single dynamically allocated wgEncodeGencodeRefSeq such as created - * with wgEncodeGencodeRefSeqLoad(). */ - -void wgEncodeGencodeRefSeqFreeList(struct wgEncodeGencodeRefSeq **pList); -/* Free a list of dynamically allocated wgEncodeGencodeRefSeq's */ - -void wgEncodeGencodeRefSeqOutput(struct wgEncodeGencodeRefSeq *el, FILE *f, char sep, char lastSep); -/* Print out wgEncodeGencodeRefSeq. Separate fields with sep. Follow last field with lastSep. */ - -#define wgEncodeGencodeRefSeqTabOut(el,f) wgEncodeGencodeRefSeqOutput(el,f,'\t','\n'); -/* Print out wgEncodeGencodeRefSeq as a line in a tab-separated file. */ - -#define wgEncodeGencodeRefSeqCommaOut(el,f) wgEncodeGencodeRefSeqOutput(el,f,',',','); -/* Print out wgEncodeGencodeRefSeq as a comma separated list including final comma. */ - -/* -------------------------------- End autoSql Generated Code -------------------------------- */ - -#endif /* WGENCODEGENCODEREFSEQ_H */ -