File Changes for wong

v252_base to v253_preview (2011-06-07 to 2011-06-14) v253

• src/hg/makeDb/doc/encodeDccHg19/wgEncodeCaltechRnaSeq.release2.notes
  • lines changed 301, context: html, text, full: html, text
    rebuilt caltech notes
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 4, context: html, text, full: html, text
    changed Estradiol tags to be more descriptive
  • lines changed 6, context: html, text, full: html, text
    added in proposal for changing dmso's term and tag
  • lines changed 13, context: html, text, full: html, text
    added in mock proposals for new DMSO entries
  • lines changed 20, context: html, text, full: html, text
    added some views and changed nhek to be unknown tissue
  • lines changed 2, context: html, text, full: html, text
    reversed nhek changes
  • lines changed 2, context: html, text, full: html, text
    added tissue category to NHEK
  • lines changed 8, context: html, text, full: html, text
    actually changed the dmso tags this time
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra
  • lines changed 89, context: html, text, full: html, text
    changed experiment names on 2 experiments who used input instead of control
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleChIPseq.ra
  • lines changed 1076, context: html, text, full: html, text
    added expId's to yale chipseq hg18
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 3, context: html, text, full: html, text
    cleaned up some metadata that wasn't passing cv validation
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 2623, context: html, text, full: html, text
    added a whole bunch of Spikein submissions
  • lines changed 2638, context: html, text, full: html, text
    added a whole bunch of spikein submissions a second time after merge conflict
  • lines changed 13, context: html, text, full: html, text
    added subId 4053 and 4055 to cshllongRnaSeq
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 11, context: html, text, full: html, text
    changed dmso tags in hg19 and mm9 to the new ones
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra
  • lines changed 41, context: html, text, full: html, text
    changed dmso tags in hg19 and mm9 to the new ones
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 680, context: html, text, full: html, text
    revoked an experiment from 4160, chagned controlId for an experiment, and changed treatments names for DEX and Estradiol
  • lines changed 167, context: html, text, full: html, text
    changed dmso tags in hg19 and mm9 to the new ones
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra
  • lines changed 7, context: html, text, full: html, text
    some labs weren't validating in the cv because they had the pi's name in the term. removed the name
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra
  • lines changed 7, context: html, text, full: html, text
    some labs weren't validating in the cv because they had the pi's name in the term. removed the name
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra
  • lines changed 18, context: html, text, full: html, text
    cleaned up some metadata that wasn't passing cv validation
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 6, context: html, text, full: html, text
    cleaned up some metadata that wasn't passing cv validation
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra
  • lines changed 38, context: html, text, full: html, text
    added some spikein submissions
  • lines changed 29, context: html, text, full: html, text
    added subId 4053 and 4055 to cshllongRnaSeq
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra
  • lines changed 7, context: html, text, full: html, text
    changed dmso tags in hg19 and mm9 to the new ones
  • lines changed 4, context: html, text, full: html, text
    changed OHTAM1 back to TAM in track db for haib rrbs and sydh tfbsd
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra
  • lines changed 29, context: html, text, full: html, text
    changed dmso tags in hg19 and mm9 to the new ones
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra
  • lines changed 105, context: html, text, full: html, text
    revoked an experiment from 4160, chagned controlId for an experiment, and changed treatments names for DEX and Estradiol
  • lines changed 91, context: html, text, full: html, text
    changed dmso tags in hg19 and mm9 to the new ones
  • lines changed 30, context: html, text, full: html, text
    left out = when i regex last time
  • lines changed 0, context: html, text, full: html, text
    fixed error in short label
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra
  • lines changed 5, context: html, text, full: html, text
    changed OHTAM1 back to TAM in track db for haib rrbs and sydh tfbsd
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra
  • lines changed 1, context: html, text, full: html, text
    added geo to filesort order for uw dnase
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhRnaSeq.ra
  • lines changed 9, context: html, text, full: html, text
    changed dmso tags in hg19 and mm9 to the new ones
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 36, context: html, text, full: html, text
    changed dmso tags in hg19 and mm9 to the new ones
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhRnaSeq.ra
  • lines changed 7, context: html, text, full: html, text
    changed dmso tags in hg19 and mm9 to the new ones
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.newR2.ra
  • lines changed 18, context: html, text, full: html, text
    changed dmso tags in hg19 and mm9 to the new ones