f84661314839764efb9dd1a74f23a498357e6716
angie
Tue Jun 14 15:07:26 2011 -0700
Bug #4302 (link in table schema for BAM files gives a 404):Fixed broken link to SAM spec, and removed dead code (that had the correct link
but is no longer exercised).
diff --git src/hg/hgTables/schema.c src/hg/hgTables/schema.c
index 9d47e71..1efbf74 100644
--- src/hg/hgTables/schema.c
+++ src/hg/hgTables/schema.c
@@ -367,34 +367,30 @@
if (!sameString(splitTable, table))
hPrintf(" (%s)", splitTable);
hPrintf(" Row Count: ");
printLongWithCommas(stdout, sqlTableSize(conn, splitTable));
hPrintf("
\n");
if (asObj != NULL)
hPrintf("Format description: %s
", asObj->comment);
describeFields(db, splitTable, asObj, conn);
if (tdbForConn != NULL)
{
char *type = tdbForConn->type;
if (startsWithWord("bigWig", type))
printf("
This table simply points to a file in "
""
"BigWig format.
\n");
- else if (startsWithWord("bam", type))
- printf("
This table simply points to a file in "
- ""
- "BAM format.
\n");
}
jpList = joinerRelate(joiner, db, table);
/* sort and unique list */
slUniqify(&jpList, joinerPairCmpOnAandB, joinerPairFree);
if (jpList != NULL)
{
webNewSection("Connected Tables and Joining Fields");
for (jp = jpList; jp != NULL; jp = jp->next)
{
if (accessControlDenied(jp->b->database, jp->b->table))
continue;
struct joinerSet *js = jp->identifier;
boolean aViaIndex, bViaIndex;