f84661314839764efb9dd1a74f23a498357e6716 angie Tue Jun 14 15:07:26 2011 -0700 Bug #4302 (link in table schema for BAM files gives a 404):Fixed broken link to SAM spec, and removed dead code (that had the correct link but is no longer exercised). diff --git src/hg/hgTables/schema.c src/hg/hgTables/schema.c index 9d47e71..1efbf74 100644 --- src/hg/hgTables/schema.c +++ src/hg/hgTables/schema.c @@ -367,34 +367,30 @@ if (!sameString(splitTable, table)) hPrintf(" (%s)", splitTable); hPrintf(" <B>Row Count:</B> "); printLongWithCommas(stdout, sqlTableSize(conn, splitTable)); hPrintf("<BR>\n"); if (asObj != NULL) hPrintf("<B>Format description:</B> %s<BR>", asObj->comment); describeFields(db, splitTable, asObj, conn); if (tdbForConn != NULL) { char *type = tdbForConn->type; if (startsWithWord("bigWig", type)) printf("<BR>This table simply points to a file in " "<A HREF=\"/goldenPath/help/bigWig.html\" TARGET=_BLANK>" "BigWig</A> format.<BR>\n"); - else if (startsWithWord("bam", type)) - printf("<BR>This table simply points to a file in " - "<A HREF=\"http://samtools.sourceforge.net/SAM1.pdf\" TARGET=_BLANK>" - "BAM</A> format.<BR>\n"); } jpList = joinerRelate(joiner, db, table); /* sort and unique list */ slUniqify(&jpList, joinerPairCmpOnAandB, joinerPairFree); if (jpList != NULL) { webNewSection("Connected Tables and Joining Fields"); for (jp = jpList; jp != NULL; jp = jp->next) { if (accessControlDenied(jp->b->database, jp->b->table)) continue; struct joinerSet *js = jp->identifier; boolean aViaIndex, bViaIndex;