19c5848e7a458a9539cf8a6d6c807f2cad38904f
kent
  Fri Jun 17 11:28:01 2011 -0700
Adding checkCoverageGaps to make
diff --git src/hg/makefile src/hg/makefile
index 2ba204e..25eea9b 100644
--- src/hg/makefile
+++ src/hg/makefile
@@ -10,31 +10,31 @@
 	encode/mkEncodeFrameset encode/hgEncodeDataVersions \
 	encode/hgEncodeVocab phyloGif hgCustom hgPal hgFileUi  hgFileSearch\
 	makeDb/hgCgiData js htdocs/style
 
 ifdef LOWELAB
     BROWSER_BINS += $(HOME)/lowelab/src/browser/tooltip $(HOME)/lowelab/src/browser/chooseorg 
 endif
 
 BROWSER_LOADERS = makeDb/hgLoadBed makeDb/hgLoadWiggle makeDb/hgLoadMaf
 
 ifneq ($(findstring $(shell hostname),hgwdev hgwbeta),)
     ENCODE_FILES =
 endif
 
 
-TEST_DIRS = lib autoDtd autoSql blastToPsl checkCoverageGaps checkTableCoords embossToPsl \
+TEST_DIRS = lib autoDtd autoSql blastToPsl checkTableCoords embossToPsl \
             genePredSingleCover genePredHisto genePredToGtf \
 	    genePredToMafFrames gbGetEntries hgGetAnn liftAcross \
             mrnaToGene pslCDnaFilter pslDiff pslHisto \
             pslPartition pslSelect pslStats pslSwap spideyToPsl \
 	    sqlToXml xmlToSql utils
 
 BROKEN_TEST_DIRS = liftOver scaffoldFaToAgp
 
 # List of directories to build
 USE_DIRS = $(UTIL_DIRS)
 
 BAD_DIRS = \
 	altGraph \
 	cgiExample \
 	geneOverlap \
@@ -52,30 +52,31 @@
 	agpAllToFaFile \
 	agpToFa \
 	agpToGl \
 	altSplice \
 	autoDtd \
 	autoSql \
 	autoXml \
 	bedOrBlocks \
 	bedIntersect \
 	bedItemOverlapCount \
 	bedSort \
 	bedToGenePred \
 	bedSplitOnChrom \
 	blastToPsl \
 	borfBig \
+	checkCoverageGaps \
 	checkHgFindSpec \
 	checkTableCoords \
 	ctgFaToFa \
 	ctgToChromFa \
 	dbTrash \
 	estOrient \
 	embossToPsl \
 	encode/validateFiles \
 	fakeFinContigs \
 	fakeOut \
 	featureBits \
 	ffaToFa \
 	fishClones \
 	fqToQa \
 	fqToQac \