155526b6cc2cd537d56ad99a5d958502c1a4315c
kent
  Fri Jun 17 11:03:23 2011 -0700
First cut of utility to check for coverage gaps in a track. Doesn't work for bigBeds yet.
diff --git src/hg/checkCoverageGaps/makefile src/hg/checkCoverageGaps/makefile
new file mode 100644
index 0000000..714be3f
--- /dev/null
+++ src/hg/checkCoverageGaps/makefile
@@ -0,0 +1,18 @@
+include ../../inc/common.mk
+
+L += ${MYSQLLIBS} -lm
+MYLIBDIR = ../../lib/${MACHTYPE}
+MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
+
+A = checkCoverageGaps
+O = checkCoverageGaps.o
+
+checkCoverageGaps: ${O} ${MYLIBS}
+	${CC} ${COPT} -o ${DESTDIR}${BINDIR}/${A}${EXE} $O ${MYLIBS} $L
+	${STRIP} ${DESTDIR}${BINDIR}/${A}${EXE}
+
+compile:: ${O}
+	${CC} ${COPT} -o ${A}${EXE} ${O} ${MYLIBS} $L
+
+clean::
+	rm -f ${A}${EXE} ${O}