File Changes for cricket

v254_preview2 to v254_base (2011-07-12 to 2011-07-19) v254

• src/hg/encode/encodeMkChangeNotes/encodeMkChangeNotes
  • lines changed 1, context: html, text, full: html, text
    added bedRnaElements
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibTfbs.release1.notes
  • lines changed 822, context: html, text, full: html, text
    Updated with dropped files
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeRikenCage.release2.notes
  • lines changed 1361, context: html, text, full: html, text
    Finishing touches on track, a new notes file, a new .html file with release notes and the new views described
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 12, context: html, text, full: html, text
    Adding terms for V7 Gencode
  • lines changed 16, context: html, text, full: html, text
    This is in repsonse to code review 4578 and 4579. I took out some provisional tags, changed a tab typo, removed some cruft
  • lines changed 4, context: html, text, full: html, text
    Replacing TSS with TssGencV7 so that we specify the version from here on out
  • lines changed 5, context: html, text, full: html, text
    Adding new readType 2x76D
  • lines changed 6, context: html, text, full: html, text
    Added in a TssGencV3c as well as the V7 added earlier
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 245, context: html, text, full: html, text
    Changed .gz to .tgz for paired fastqs, removed V2 where added erroneously, added origAssmbly where added erroneously, trying to remove md5sums for the paired fastqs
  • lines changed 35, context: html, text, full: html, text
    Changed TSS to TssGencV3c for clarification
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 221, context: html, text, full: html, text
    Adding 4 submissions with the V7 files
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra
  • lines changed 5, context: html, text, full: html, text
    Removed replicate pooled
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 600, context: html, text, full: html, text
    replacing Riken TSS with Riken TSS GencV7
  • lines changed 89, context: html, text, full: html, text
    Finishing touches on track, a new notes file, a new .html file with release notes and the new views described
  • lines changed 2, context: html, text, full: html, text
    Remove fileiIndex
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwAffyExonArray.ra
  • lines changed 2, context: html, text, full: html, text
    added geo Series number
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.ra
  • lines changed 1, context: html, text, full: html, text
    Changed fileSortOrder
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra
  • lines changed 1, context: html, text, full: html, text
    Removed the numbers from the begeinning of the labels
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.html
  • lines changed 141, context: html, text, full: html, text
    Finishing touches on track, a new notes file, a new .html file with release notes and the new views described
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra
  • lines changed 1, context: html, text, full: html, text
    Finishing touches on track, a new notes file, a new .html file with release notes and the new views described