Commits for hiram

v254_preview2 to v254_base (2011-07-12 to 2011-07-19) v254

• adding hg19Patch5
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 23, context: html, text, full: html, text
• running the fosEnd build and patch5 is complete
  • src/hg/makeDb/doc/hg19.txt - lines changed 189, context: html, text, full: html, text
• completed hg19Patch5 build and alignments to hg19
  • src/hg/makeDb/doc/hg19Patch5.txt - lines changed 167, context: html, text, full: html, text
• adding altSeqCompositeP5 and hg19FosEnd pairs tracks
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 126, context: html, text, full: html, text
• modernize to newer style of kent code
  • src/hg/pslPairs/pslPairs.c - lines changed 80, context: html, text, full: html, text
• distinguish patch 5 GRC Patch Release track labels
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 2, context: html, text, full: html, text
• move the altSeqComposite into separate files to allow update to patch5
  • src/hg/makeDb/trackDb/human/hg19/altSeqComposite2.ra - lines changed 104, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/altSeqComposite5.ra - lines changed 104, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 209, context: html, text, full: html, text
• patch5 tracks done for hg19 and blat server turned on for hg19Patch5
  • src/hg/makeDb/doc/hg19.txt - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg19Patch5.txt - lines changed 15, context: html, text, full: html, text
• adding liftOver from cavPor3 to hg19
  • src/hg/makeDb/doc/cavPor3.txt - lines changed 14, context: html, text, full: html, text