Commits for kate

v254_preview2 to v254_base (2011-07-12 to 2011-07-19) v254

• Allow Control terms for Antibody type (non-canonical validation of term for type -- should eventually go into cv.c
  • src/hg/lib/encode/encodeExp.c - lines changed 21, context: html, text, full: html, text
  • src/hg/lib/mdb.c - lines changed 1, context: html, text, full: html, text
• Too much information
  • src/hg/lib/mdb.c - lines changed 1, context: html, text, full: html, text
• Merging with origin
  • src/hg/encode/encodeExp/encodeExp - lines changed 20919, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/foo.ra - lines changed 3296, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg18.in.ra - lines changed 5712, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg18.new.ra - lines changed 553, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg18.newest.ra - lines changed 881, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.dump - lines changed 56, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.found.ra - lines changed 12803, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.in.ra - lines changed 7756, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.new.ra - lines changed 12201, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.newest.ra - lines changed 12681, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.out.ra - lines changed 16461, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.ra - lines changed 11238, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.tues.ra - lines changed 12446, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.txt - lines changed 1873, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/meta.ra - lines changed 13027, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/mm9.9pm.ra - lines changed 259, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/mm9.in.ra - lines changed 259, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/mm9.new.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeExp/junk/mm9.newest.ra - lines changed 539, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/mm9.tues.ra - lines changed 535, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/new.out.ra - lines changed 4527, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/old.out.ra - lines changed 16857, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/out.ra - lines changed 14984, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/out.txt - lines changed 1873, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/test.ra - lines changed 21, context: html, text, full: html, text
  • src/hg/encode/encodeExp/tags - lines changed 37, context: html, text, full: html, text
  • src/hg/encode/encodeExp/temp.ra - lines changed 161, context: html, text, full: html, text
  • src/hg/encode/encodeMkGeoPkg/ucsc_encode_dcc_wgEncodeCaltechRnaSeq.soft - lines changed 1733, context: html, text, full: html, text
  • src/hg/encode/hgEncodeMatrix/hgEncodeMatrix.c - lines changed 196, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/config/database.yml - lines changed 81, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/config/environment.rb - lines changed 92, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/go - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/stop - lines changed 3, context: html, text, full: html, text
  • src/hg/hgGateway/tags - lines changed 18, context: html, text, full: html, text
  • src/hg/htdocs/ENCODE/dataMatrix/sav - lines changed 76, context: html, text, full: html, text
  • src/hg/htdocs/images/floretPreview.kuhn.jpg - lines changed 253, context: html, text, full: html, text
  • src/hg/lib/TAGS - lines changed 28029, context: html, text, full: html, text
  • src/hg/lib/encode/encodeExp.c - lines changed 21, context: html, text, full: html, text
  • src/hg/lib/make.out - lines changed 71, context: html, text, full: html, text
  • src/hg/lib/stash/exp/mdb.c - lines changed 3419, context: html, text, full: html, text
  • src/hg/lib/tags - lines changed 30974, context: html, text, full: html, text
  • src/hg/makeDb/mdbUpdate/tests/output/chipSeqTest1.ra - lines changed 191, context: html, text, full: html, text
  • src/hg/makeDb/mdbUpdate/tests/output/expTest1.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cv/alpha/.cv.ra.swp - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cv/alpha/cv.tier2.5.ra - lines changed 10392, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cv/alpha/junk/cv.txt - lines changed 1433, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/junk/boo - lines changed 56, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/junk/showStatus.csh - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/junk/temp - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/junk/temp.txt - lines changed 221, context: html, text, full: html, text
  • src/inc/sav/common.mk - lines changed 201, context: html, text, full: html, text
  • src/makelibs.out - lines changed 119, context: html, text, full: html, text
• Temporary ad for Previw browser (will be replaced by hgTrackUi note after next release)
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeTfBindingSuper.html - lines changed 4, context: html, text, full: html, text
• Removing junk
  • src/hg/encode/encodeExp/encodeExp - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• Removing junk
  • src/hg/encode/encodeExp/junk/foo.ra - lines changed 3296, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg18.in.ra - lines changed 5712, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg18.new.ra - lines changed 553, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg18.newest.ra - lines changed 881, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.dump - lines changed 56, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.found.ra - lines changed 12803, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.in.ra - lines changed 7756, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.new.ra - lines changed 12201, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.newest.ra - lines changed 12681, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.out.ra - lines changed 16461, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.ra - lines changed 11238, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.tues.ra - lines changed 12446, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/hg19.txt - lines changed 1873, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/meta.ra - lines changed 13027, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/mm9.9pm.ra - lines changed 259, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/mm9.in.ra - lines changed 259, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/mm9.new.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/encode/encodeExp/junk/mm9.newest.ra - lines changed 539, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/mm9.tues.ra - lines changed 535, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/new.out.ra - lines changed 4527, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/old.out.ra - lines changed 16857, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/out.ra - lines changed 14984, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/out.txt - lines changed 1873, context: html, text, full: html, text
  • src/hg/encode/encodeExp/junk/test.ra - lines changed 21, context: html, text, full: html, text
  • src/hg/encode/encodeExp/tags - lines changed 37, context: html, text, full: html, text
  • src/hg/encode/encodeExp/temp.ra - lines changed 161, context: html, text, full: html, text
• Removing junk
  • src/hg/encode/encodeMkGeoPkg/ucsc_encode_dcc_wgEncodeCaltechRnaSeq.soft - lines changed 1733, context: html, text, full: html, text
• Removing junk
  • src/hg/encode/hgEncodeMatrix/hgEncodeMatrix.c - lines changed 196, context: html, text, full: html, text
• Removing junk
  • src/hg/encode/hgEncodeSubmit/config/database.yml - lines changed 81, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/config/environment.rb - lines changed 92, context: html, text, full: html, text
• Removing junk
  • src/hg/encode/hgEncodeSubmit/go - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/stop - lines changed 3, context: html, text, full: html, text
• Removing junk
  • src/hg/hgGateway/tags - lines changed 18, context: html, text, full: html, text
  • src/hg/htdocs/ENCODE/dataMatrix/sav - lines changed 76, context: html, text, full: html, text
• Removing junk
  • src/hg/htdocs/images/floretPreview.kuhn.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• Removing junk
  • src/hg/lib/TAGS - lines changed 28029, context: html, text, full: html, text
  • src/hg/lib/make.out - lines changed 71, context: html, text, full: html, text
  • src/hg/lib/stash/exp/mdb.c - lines changed 3419, context: html, text, full: html, text
  • src/hg/lib/tags - lines changed 30974, context: html, text, full: html, text
  • src/hg/makeDb/mdbUpdate/tests/output/chipSeqTest1.ra - lines changed 191, context: html, text, full: html, text
  • src/hg/makeDb/mdbUpdate/tests/output/expTest1.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cv/alpha/.cv.ra.swp - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• Removing junk
  • src/hg/makeDb/trackDb/cv/alpha/cv.tier2.5.ra - lines changed 10392, context: html, text, full: html, text
• Removing junk
  • src/hg/makeDb/trackDb/cv/alpha/junk/cv.txt - lines changed 1433, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/junk/boo - lines changed 56, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/junk/showStatus.csh - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/junk/temp - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/junk/temp.txt - lines changed 221, context: html, text, full: html, text
  • src/inc/sav/common.mk - lines changed 201, context: html, text, full: html, text
  • src/makelibs.out - lines changed 119, context: html, text, full: html, text
• Add June and July news items
  • src/hg/htdocs/ENCODE/index.html - lines changed 105, context: html, text, full: html, text
  • src/hg/htdocs/ENCODE/newsarch.html - lines changed 45, context: html, text, full: html, text
• Add Usage Resources page to portal
  • src/hg/htdocs/ENCODE/index.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/ENCODE/usageResources.html - lines changed 73, context: html, text, full: html, text