9a09918d5d65cdaa2c7e86bfc0daed6d071f7f67 Merge parents 2e1aaa4 12bad42 pauline Tue Jul 12 14:14:36 2011 -0700 Fixing merge conflict, hopefully no new edits. diff --cc src/hg/htdocs/indexNews.html index d8eb32a,8550c8b..fca32bf --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@@ -1,85 -1,121 +1,120 @@@ <!--News Section-----------------------------------------------> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="#fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="#D9E4F8" BACKGROUND="images/hr.gif" WIDTH="100%" BORDER=0> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD ALIGN="left"> <font size="4"><a name="TOC"></a><b> News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" alt="Follow GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a></TD> <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="https://lists.soe.ucsc.edu/mailman/listinfo/genome-announce" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> + + <!-- OMIM release --> <P> - <FONT FACE="courier" SIZE="3"><B>27 May 2011 - New - Release of UCSC Genes for Mouse</B></FONT> - </P> + <FONT FACE="courier" SIZE="3"><B>16 June 2011 - + Re-engineered OMIM Tracks Released </B></FONT> <P> - We've released an updated set of UCSC Genes for the mm9 - (NCBI Build 37) mouse Genome Browser. This version of the - gene set was generated using the same computational - pipeline as the previous mm9 UCSC Genes, but is based on - more recent GenBank data. - <P> - The new release has 55,419 total transcripts, compared with - 49,409 in the previous version. The total number of canonical - genes has increased from 27,389 to 28,661. + We announce today the release of our newly re-engineered OMIM + (Online Mendelian Inheritance in Man) tracks for both hg18 and + hg19. With the kind assistance of Ada Hamosh (director), + Joanna Amberger and Francois Schiettecatte of the OMIM project, + we have divided the OMIM records into three separate tracks: + </P> + <P> + <B>OMIM Allelic Variant SNPs</B> + <BR> + Variants in the OMIM database that have associated dbSNP identifiers. + </P> + + <P> + <B>OMIM Genes</B> + <BR> + The genomic positions of gene entries in the OMIM database. + The coloring indicates the associated OMIM phenotype class. + </P> + + <P> + <B>OMIM Phenotypes - Gene Unknown</B> + <BR> + Regions known to be associated with a phenotype, but for which no + specific gene is known to be causative. This track also includes + known multi-gene syndromes. + </P> + + <P> + The new tracks can be found in the Phenotype and Disease Associations + track group below the browser graphic + and are searchable by OMIM number. In most cases, + simply typing the 6-digit MIM number into the position/search box + on the Browser will take you to the record. + </P> + + <P> + The OMIM data are the property of Johns Hopkins University and + will not be available for download from UCSC. Please contact the + OMIM project at <A HREF = "http://omim.org/downloads" + TARGET = _BLANK>omim.org</A> for download information. + </P> + + <P> + UCSC thanks engineers Fan Hsu, Brooke Rhead and Robert Kuhn for + this release. + </P> + <HR> + + <!-- Preview Browser --> <P> - Comparing the new gene set with the previous version: - <UL> - <LI>33,977 transcripts did not change between versions - <LI>69 transcripts were not carried forward to the new version - <LI>13,701 transcripts are compatible with those in the - previous set - <LI>1,662 transcripts overlap with those in the previous set - </UL> - </P> - <HR> + <FONT FACE="courier" SIZE="3"><B>9 June 2011 - + UCSC Preview Browser Available</B></FONT> - <P> + Early access to ENCODE and other UCSC browser data tracks under + construction is now available from the new UCSC Preview Browser site: + <A HREF="http://genome-preview.ucsc.edu">http://genome-preview.ucsc.edu</A>. + <A HREF="goldenPath/newsarch.html#060911">Read more</A>. + </P> + - <!-- ENCODE usability survey --> + <!-- anoCar2 Browser Release --> <P> - <FONT FACE="courier" SIZE="3"><B>1 May 2011 - ENCODE - User's Guide and Usability Survey: </B></FONT> - The ENCODE project has just published an overview of their ongoing large-scale - efforts to interpret the human genome sequence in the journal PLoS Biology. - <a target=_blank href="http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1001046 "> - A Users Guide to the Encyclopedia of DNA Elements</a>, - highlights the scope of data production, and provides guidance for locating - and using the data. - <A HREF="goldenPath/newsarch.html#050111">Read more</A>. + <FONT FACE="courier" SIZE="3"><B>7 June 2011 - + Updated Lizard Browser Available: </B></FONT> + We have released a Genome Browser for the May 2010 + genome assembly of the green anole lizard, <em>Anolis + carolinensis</em> (Broad + version AnoCar2.0, UCSC version anoCar2). + <A HREF="goldenPath/newsarch.html#060711">Read more</A>. </P> - <!-- hg19 snp132 release --> + <!-- mm9 UCSC Genes --> <P> - <FONT FACE="courier" SIZE="3"><B>18 April 2011 - - dbSNP 132 Available for hg19: </B></FONT> - We are pleased to announce the release of four tracks derived from - <a href="http://www.ncbi.nlm.nih.gov/projects/SNP/" target=_blank>dbSNP</a> - build 132, available on the human assembly (GRCh37/hg19). - dbSNP build 132 is available at NCBI. - <A HREF="goldenPath/newsarch.html#041811.2">Read more</A>. + <FONT FACE="courier" SIZE="3"><B>26 May 2011 - New + Release of UCSC Genes for Mouse:</B></FONT> + We've released an updated set of UCSC Genes for the mm9 + (NCBI Build 37) mouse Genome Browser. + <A HREF="goldenPath/newsarch.html#052611">Read more</A>. </P> - + ==> <a href="goldenPath/newsarch.html">News Archives</a> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>