Commits for wong
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v254_preview2 to v254_base (2011-07-12 to 2011-07-19) v254
- changed treatment to tnfa for experiment that were incorrect
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 173, context: html, text, full: html, text
- added provisional exonsgencv7 term
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 7, context: html, text, full: html, text
- loaded mdb for 4412, it was missing earlier
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 129, context: html, text, full: html, text
- added in some missing meta data
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 385, context: html, text, full: html, text
- corrected some errors in haib tfbs's html
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.html - lines changed 9, context: html, text, full: html, text
- fixed a word
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.html - lines changed 1, context: html, text, full: html, text
- removed K562b traces
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 137, context: html, text, full: html, text
- correct some html errors
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.html - lines changed 8, context: html, text, full: html, text
- changed control for gm12878 nfkb form std to iggrab
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 21, context: html, text, full: html, text
- changed files names for adding iggrab to gm12878 nfkb
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 78, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 34, context: html, text, full: html, text
- changed a word
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.html - lines changed 1, context: html, text, full: html, text
- added a lot of subtracks to cshl short rna seq
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 1199, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra - lines changed 437, context: html, text, full: html, text
- added a lot of cshl long tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 4201, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 1014, context: html, text, full: html, text
- subgroups didn't have pooled, but patchtdb didn't throw error
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 60, context: html, text, full: html, text
- a previous search and replace error made chromatin > chromatim, corrected
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 8, context: html, text, full: html, text
- marked up some more comments and removed deprecated lines from doEncodeValidate
- src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 26, context: html, text, full: html, text
- changed supertrack view for haib to dense
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 1, context: html, text, full: html, text
- cleaned up a lot of stuff in sydh tfbs per redmine #69
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 489, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 143, context: html, text, full: html, text
- mispelling in short label
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 1, context: html, text, full: html, text
- removbed files that I accidently restored through a git error from back in the day.
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibTfbs.release1.notes - lines changed 6, context: html, text, full: html, text
- commit hand made changes before i try out my script to mass change dates for a large paper
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 7, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 68, context: html, text, full: html, text
- changed dates for dateUnrestricted according to redmine 4331
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 161, context: html, text, full: html, text
- added references to the pages according to redmine 4331
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.html - lines changed 13, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.html - lines changed 10, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.html - lines changed 21, context: html, text, full: html, text
- moved k562/mnased/setdb1 to release 2 also found one last k562b that i missed somehow
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 8, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 16, context: html, text, full: html, text
- added geo accession sort field
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra - lines changed 1, context: html, text, full: html, text
- forgot to commit histone changes for K562b
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 28, context: html, text, full: html, text
- removed fileIndex field
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 320, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 5, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 166, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra - lines changed 79, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 110, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra - lines changed 41, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 98, context: html, text, full: html, text
- correct a typing error TFNa > TNFa
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 86, context: html, text, full: html, text
- corrected some control errors, more to go
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 42, context: html, text, full: html, text
- renamed mislabeled control
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 8, context: html, text, full: html, text
- fixed metadata control issues
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 127, context: html, text, full: html, text
- changed name for mislabeled control
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 5, context: html, text, full: html, text
- added missing TNFa treatments to subgroups and labels
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 27, context: html, text, full: html, text
- fixed even more metadata control issues, name changes in this one too
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 100, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 18, context: html, text, full: html, text
- forgot to add tnfa to gm12878
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 158, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 5, context: html, text, full: html, text
- reverted previous commit, it was done in error
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 203, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 5, context: html, text, full: html, text
- added dccaccesion expId's where missing and changed controlId over to dcc accession
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 1977, context: html, text, full: html, text
- put in filesort order for sydh tfbs, mainly a placeholder
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 1, context: html, text, full: html, text
- corrected a typing error
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 1, context: html, text, full: html, text
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