b633c35e25be8790e5a61c2d80c367f01b1226df mmaddren Tue Jun 28 14:53:39 2011 -0700 new version of mkGeoPkg diff --git python/ucscgenomics/softfile/mkGeoPkg python/ucscgenomics/softfile/mkGeoPkg deleted file mode 100644 index 0109aa8..0000000 --- python/ucscgenomics/softfile/mkGeoPkg +++ /dev/null @@ -1,23 +0,0 @@ -from RaFile import * - -rafile = RaFile(metafile) -filedict = dict() #expId : filelist -geomapping = dict() #expId : geoSampleAccession - -for stanza in rafile: - - #if the stanza is a series - #process it separately and then continue - - if 'expId' not in stanza: - raise KeyError('no expId for ' + stanza.name) - - if stanza['expId'] not in filedict: - filedict[stanza['expId']] = list() - - filedict[stanza['expId']].append(filename) - - if 'geoSampleAccession' in stanza: - geomapping[stanza['expId']] = stanza['geoSampleAccession'] - -#process the filedict and make the soft file \ No newline at end of file