File Changes for mmaddren

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v254_preview to v254_preview2 (2011-07-05 to 2011-07-12) v254

python/lib/ucscgenomics/__init__.py
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/cvfile/CvFile.py
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python/lib/ucscgenomics/cvfile/__init__.py
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python/lib/ucscgenomics/cvfile/unittest/input/Antibody/BlankKey.ra
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python/lib/ucscgenomics/cvfile/unittest/input/Antibody/ExtraKey.ra
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python/lib/ucscgenomics/cvfile/unittest/input/Antibody/MissingKey.ra
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python/lib/ucscgenomics/cvfile/unittest/input/Antibody/NonmatchKey.ra
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python/lib/ucscgenomics/cvfile/unittest/input/Antibody/ValidStanza.ra
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python/lib/ucscgenomics/cvfile/unittest/input/CellLine/BlankKey.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/cvfile/unittest/input/CellLine/ExtraKey.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/cvfile/unittest/input/CellLine/MissingKey.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/cvfile/unittest/input/CellLine/NonmatchKey.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/cvfile/unittest/input/CellLine/ValidStanza.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/cvfile/unittest/input/Mouse/BlankKey.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/cvfile/unittest/input/Mouse/ExtraKey.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/cvfile/unittest/input/Mouse/MissingKey.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/cvfile/unittest/input/Mouse/NonmatchKey.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/cvfile/unittest/input/Mouse/ValidStanza.ra
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python/lib/ucscgenomics/cvfile/unittest/testCvFile
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python/lib/ucscgenomics/ordereddict/OrderedDict.py
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python/lib/ucscgenomics/ordereddict/__init__.py
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python/lib/ucscgenomics/rafile/RaFile.py
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python/lib/ucscgenomics/rafile/__init__.py
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python/lib/ucscgenomics/rafile/unittest/testRaFile.py
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python/lib/ucscgenomics/rafile/unittest/testoutput/BasicDiff.out
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python/lib/ucscgenomics/rafile/unittest/testoutput/CommentsDiff.out
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python/lib/ucscgenomics/rafile/unittest/testoutput/DeleteItem.out
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python/lib/ucscgenomics/rafile/unittest/testoutput/ExtraneousWhitespace.out
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python/lib/ucscgenomics/rafile/unittest/testoutput/GetItem.out
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python/lib/ucscgenomics/rafile/unittest/testoutput/InlineCommentsDiff.out
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python/lib/ucscgenomics/rafile/unittest/testoutput/IterEntryItems.out
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python/lib/ucscgenomics/rafile/unittest/testoutput/IterEntryKeys.out
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/testoutput/IterEntryValues.out
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/testoutput/IterItems.out
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python/lib/ucscgenomics/rafile/unittest/testoutput/IterKeys.out
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/testoutput/IterValues.out
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/tests/BasicDiff.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/tests/CommentsDiff.ra
- lines changed 14, context: html, text, full: html, text
  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/tests/DeleteItem.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/tests/DuplicateKeys.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/tests/FunctionalityCheck.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/tests/GetItem.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/tests/InlineCommentsDiff.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/tests/IterEntryItems.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/tests/IterEntryKeys.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/tests/IterEntryValues.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/tests/IterItems.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/tests/IterKeys.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/tests/IterValues.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/tests/MisplacedKeys.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/lib/ucscgenomics/rafile/unittest/tests/NonNewlineFile.ra
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python/lib/ucscgenomics/softfile/SoftFile.py
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python/lib/ucscgenomics/softfile/__init__.py
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python/lib/ucscgenomics/softfile/unittest/testSoft
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python/programs/cvValidate/README
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python/programs/cvValidate/cvValidate
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python/programs/mkGeoPkg/README
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python/programs/mkGeoPkg/mkGeoPkg
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python/style.txt
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python/ucscgenomics/__init__.py
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python/ucscgenomics/cvValidate/README
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python/ucscgenomics/cvValidate/cvValidate
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python/ucscgenomics/lib/__init__.py
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python/ucscgenomics/lib/cvfile/CvFile.py
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python/ucscgenomics/lib/cvfile/__init__.py
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python/ucscgenomics/lib/cvfile/unittest/input/Antibody/BlankKey.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/ucscgenomics/lib/cvfile/unittest/input/Antibody/ExtraKey.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/ucscgenomics/lib/cvfile/unittest/input/Antibody/MissingKey.ra
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python/ucscgenomics/lib/cvfile/unittest/input/Antibody/NonmatchKey.ra
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python/ucscgenomics/lib/cvfile/unittest/input/Antibody/ValidStanza.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/ucscgenomics/lib/cvfile/unittest/input/CellLine/BlankKey.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/ucscgenomics/lib/cvfile/unittest/input/CellLine/ExtraKey.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/ucscgenomics/lib/cvfile/unittest/input/CellLine/MissingKey.ra
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python/ucscgenomics/lib/cvfile/unittest/input/CellLine/NonmatchKey.ra
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  restructred directory again, updated mkGeoPkg, fixed a bug in OrderedDict, and removed extra __init__ file
python/ucscgenomics/lib/cvfile/unittest/input/CellLine/ValidStanza.ra
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python/ucscgenomics/lib/cvfile/unittest/input/Mouse/BlankKey.ra
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python/ucscgenomics/lib/cvfile/unittest/input/Mouse/ExtraKey.ra
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python/ucscgenomics/lib/cvfile/unittest/input/Mouse/MissingKey.ra
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python/ucscgenomics/lib/cvfile/unittest/input/Mouse/NonmatchKey.ra
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python/ucscgenomics/lib/cvfile/unittest/input/Mouse/ValidStanza.ra
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python/ucscgenomics/lib/cvfile/unittest/testCvFile
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python/ucscgenomics/lib/ordereddict/OrderedDict.py
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python/ucscgenomics/lib/ordereddict/__init__.py
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python/ucscgenomics/lib/rafile/RaFile.py
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python/ucscgenomics/lib/rafile/__init__.py
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python/ucscgenomics/lib/rafile/unittest/testRaFile.py
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python/ucscgenomics/lib/rafile/unittest/testoutput/BasicDiff.out
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python/ucscgenomics/lib/rafile/unittest/testoutput/CommentsDiff.out
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python/ucscgenomics/lib/rafile/unittest/testoutput/DeleteItem.out
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python/ucscgenomics/lib/rafile/unittest/testoutput/ExtraneousWhitespace.out
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python/ucscgenomics/lib/rafile/unittest/testoutput/GetItem.out
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python/ucscgenomics/lib/rafile/unittest/testoutput/InlineCommentsDiff.out
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python/ucscgenomics/lib/rafile/unittest/testoutput/IterEntryItems.out
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python/ucscgenomics/lib/rafile/unittest/testoutput/IterEntryKeys.out
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python/ucscgenomics/lib/rafile/unittest/testoutput/IterEntryValues.out
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python/ucscgenomics/lib/rafile/unittest/testoutput/IterItems.out
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python/ucscgenomics/lib/rafile/unittest/testoutput/IterKeys.out
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python/ucscgenomics/lib/rafile/unittest/testoutput/IterValues.out
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python/ucscgenomics/lib/rafile/unittest/tests/BasicDiff.ra
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python/ucscgenomics/lib/rafile/unittest/tests/CommentsDiff.ra
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python/ucscgenomics/lib/rafile/unittest/tests/DeleteItem.ra
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python/ucscgenomics/lib/rafile/unittest/tests/DuplicateKeys.ra
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python/ucscgenomics/lib/rafile/unittest/tests/FunctionalityCheck.ra
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python/ucscgenomics/lib/rafile/unittest/tests/GetItem.ra
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python/ucscgenomics/lib/rafile/unittest/tests/InlineCommentsDiff.ra
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python/ucscgenomics/lib/rafile/unittest/tests/IterEntryItems.ra
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python/ucscgenomics/lib/rafile/unittest/tests/IterEntryKeys.ra
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python/ucscgenomics/lib/rafile/unittest/tests/IterEntryValues.ra
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python/ucscgenomics/lib/rafile/unittest/tests/IterItems.ra
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python/ucscgenomics/lib/rafile/unittest/tests/IterKeys.ra
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python/ucscgenomics/lib/rafile/unittest/tests/IterValues.ra
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python/ucscgenomics/lib/rafile/unittest/tests/MisplacedKeys.ra
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python/ucscgenomics/lib/rafile/unittest/tests/NonNewlineFile.ra
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python/ucscgenomics/lib/softfile/SoftFile.py
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python/ucscgenomics/lib/softfile/__init__.py
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python/ucscgenomics/lib/softfile/unittest/testSoft
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python/ucscgenomics/mkGeoPkg/README
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python/ucscgenomics/mkGeoPkg/mkGeoPkg
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python/ucscgenomics/style.txt
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src/hg/makeDb/trackDb/cv/alpha/CD34+Mobilized_Stam_protocol.pdf
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  removed protocols from the cv directory and put them in the correct spot on htdocsExtras
src/hg/makeDb/trackDb/cv/alpha/HBVP_Stam_protocol.pdf
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src/hg/makeDb/trackDb/cv/alpha/HBVSMC_Stam_protocol.pdf
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src/hg/makeDb/trackDb/cv/alpha/HMVECdAd_Stam_protocol.pdf
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src/hg/makeDb/trackDb/cv/alpha/HPAEC_Stam_protocol.pdf
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src/hg/makeDb/trackDb/cv/alpha/NHBE_Stam_protocol.pdf
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