File Changes for wong

v254_preview to v254_preview2 (2011-07-05 to 2011-07-12) v254

• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 95, context: html, text, full: html, text
    made a new way of generating long labels in doEncodeValidate, it now generates long labels much closer to accepted convention. At least for human, sorry mouse.
  • lines changed 13, context: html, text, full: html, text
    added a function to make sure passed variables are at least defined, and a function to turn _ into spaces, and some comments
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeSydhHistone.release2.notes
  • lines changed 395, context: html, text, full: html, text
    added sydh histone release2 notes
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 105, context: html, text, full: html, text
    changed short labels, other minor corrections, and changed incorrect controls
  • lines changed 834, context: html, text, full: html, text
    changed hek293 and hepg2 from b to original, also cleaned up some tags in trackDb
  • lines changed 42, context: html, text, full: html, text
    removed all traces of hepg2b and hek293b
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.html
  • lines changed 13, context: html, text, full: html, text
    fixed some html errors redmine #1708
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.html
  • lines changed 5, context: html, text, full: html, text
    cleaned up short labels and html for haib tfbs
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra
  • lines changed 563, context: html, text, full: html, text
    cleaned up short labels and html for haib tfbs
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra
  • lines changed 191, context: html, text, full: html, text
    changed short labels, other minor corrections, and changed incorrect controls
  • lines changed 48, context: html, text, full: html, text
    fixed some short label stuff, propagated the name changes to the .new.ra, merged the hek293b and hepg2b into the originals
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra
  • lines changed 16, context: html, text, full: html, text
    changed short labels, other minor corrections, and changed incorrect controls
  • lines changed 182, context: html, text, full: html, text
    fixed some short label stuff, propagated the name changes to the .new.ra, merged the hek293b and hepg2b into the originals
  • lines changed 298, context: html, text, full: html, text
    changed hek293 and hepg2 from b to original, also cleaned up some tags in trackDb
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra
  • lines changed 1, context: html, text, full: html, text
    missing semicolon in cell name