File Changes for wong

v255_preview2 to v255_base (2011-08-02 to 2011-08-08) v255

• src/hg/encode/encodeDownloadReadme/downloadsReadmeTemplate.txt
  • lines changed 3, context: html, text, full: html, text
    corrected files.txt line and removed line referencing md5sum
• src/hg/encode/encodeDownloadReadme/encodeDownloadReadme.pl
  • lines changed 58, context: html, text, full: html, text
    cleaned up code, rewrote other parts, added function to check group write permissions before trying to create file
  • lines changed 1, context: html, text, full: html, text
    put reminder to email
• src/hg/encode/encodeLoad/doEncodeLoad.pl
  • lines changed 36, context: html, text, full: html, text
    added functionality to check for README.txt and if not there, put it in.
• src/hg/encode/encodeMkChangeNotes/encodeMkChangeNotes
  • lines changed 1, context: html, text, full: html, text
    repleace index.html with README.txt
• src/hg/encode/encodeMkFilesList/encodeMkFilesList
  • lines changed 513, context: html, text, full: html, text
    added in first version of encodeMkFilesList
  • lines changed 19, context: html, text, full: html, text
    fixed a bug when using a different directory, and when the md5sum.history file is broken
• src/hg/encode/encodeMkFilesList/makefile
  • lines changed 27, context: html, text, full: html, text
    added in first version of encodeMkFilesList
• src/hg/encode/encodeValidate/config/downloadsReadmeTemplate.txt
  • lines changed 45, context: html, text, full: html, text
    removed downloadstemplate from encodevalidate/config directory
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 1, context: html, text, full: html, text
    added tag to show that a label was autogenerated
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeSydhTfbs.release1.notes
  • lines changed 3911, context: html, text, full: html, text
    added notes for sydh tfbs and uw 5c
  • lines changed 5166, context: html, text, full: html, text
    updated sydhtfbs and uw5c notes files
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUw5C.release1.notes
  • lines changed 84, context: html, text, full: html, text
    added notes for sydh tfbs and uw 5c
  • lines changed 5, context: html, text, full: html, text
    updated sydhtfbs and uw5c notes files
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
  • lines changed 1, context: html, text, full: html, text
    added gencode to makefile
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencode.ra
  • lines changed 153, context: html, text, full: html, text
    made metadata file for gencode v3
  • lines changed 4, context: html, text, full: html, text
    removed quotes
  • lines changed 115, context: html, text, full: html, text
    this is my hand made one
  • lines changed 26, context: html, text, full: html, text
    reprinted out again
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV3.ra
  • lines changed 3, context: html, text, full: html, text
    comment out metadata lines
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.html
  • lines changed 8, context: html, text, full: html, text
    added track displays and conventions