File Changes for cricket

v254_base to v255_preview (2011-07-19 to 2011-07-26) v255

• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 37, context: html, text, full: html, text
    Adding the typeOfTerm type, removing parentTable and fileIndex, changing the names of geoSeries and geoSample to have accession in the name. Mostly I am trying to get the CV to match what we have in the database so that the validators work.
  • lines changed 8, context: html, text, full: html, text
    Reviewed the provisinal tags
  • lines changed 1, context: html, text, full: html, text
    Changed None to none
• src/hg/makeDb/trackDb/cv/beta/cv.ra
  • lines changed 156, context: html, text, full: html, text
    Summary of changes: Commented out all of the variations of BJ tert until we figure it out (ticket 4536). Added views for all of the GencodeV7 data that will be coming in, changed an old view to specify GencodeV3c. Cleaned up typeOfTerms by removing parentTable and fileIndex which have been retired, changing geoSeries and geoSample to be geo*Accession to comply wiht validator, added type as a typeOfTerm. There were many changes to protocol links to try to fix those in ticket 4408. Added a new control RevXLink.
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 555, context: html, text, full: html, text
    Changed geoSeries and geoSample to have Accession and swapped Paired for Alignments
  • lines changed 1, context: html, text, full: html, text
    Changing geoSample to geoSampleAccession and swapping Paired for Alignments
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaMethylSeq.ra
  • lines changed 16, context: html, text, full: html, text
    Changed dccNotes to dccInternalNotes
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 149, context: html, text, full: html, text
    Changed var names that failed in the validation process. Riken: dateResubmitted, GisChiaPet: docId submitPath, UncBsu: dccInternalNotes, Caltech:dateSubmitted
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 5116, context: html, text, full: html, text
    Long and short labels, removed V3c and added V7, fixed the cv line
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra
  • lines changed 193, context: html, text, full: html, text
    Changed var names that failed in the validation process. Riken: dateResubmitted, GisChiaPet: docId submitPath, UncBsu: dccInternalNotes, Caltech:dateSubmitted
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra
  • lines changed 15, context: html, text, full: html, text
    Changed var names that failed in the validation process. Riken: dateResubmitted, GisChiaPet: docId submitPath, UncBsu: dccInternalNotes, Caltech:dateSubmitted
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 50, context: html, text, full: html, text
    Changed var names that failed in the validation process. Riken: dateResubmitted, GisChiaPet: docId submitPath, UncBsu: dccInternalNotes, Caltech:dateSubmitted
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProt.ra
  • lines changed 3, context: html, text, full: html, text
    Changed var names that failed in the validation process. Riken: dateResubmitted, GisChiaPet: docId submitPath, UncBsu: dccInternalNotes, Caltech:dateSubmitted
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra
  • lines changed 826, context: html, text, full: html, text
    Long and short labels, removed V3c and added V7, fixed the cv line
  • lines changed 2, context: html, text, full: html, text
    Changed defualts for order and visibility of views
  • lines changed 4, context: html, text, full: html, text
    adding mean+whiskers for signals and filter at 200 for Junctions
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra
  • lines changed 27, context: html, text, full: html, text
    Changed Contigs and Junctions to be bed 6 for display purposes