e5f540b8d4762d28f98a6ade2ac84f63205a4333
hiram
  Tue Jul 26 13:14:14 2011 -0700
adding a bedCollapse.pl command to the scripts
diff --git src/utils/makefile src/utils/makefile
index 4654cf8..aee6d34 100644
--- src/utils/makefile
+++ src/utils/makefile
@@ -31,30 +31,31 @@
 	cd pslLiftSubrangeBlat && ${MAKE} test
 	cd bedGeneParts && ${MAKE} test
 
 clean:
 	@for D in $(USE_DIRS) x; do \
 	  if test "$$D" != "x" ; then \
 	    ( cd $$D && echo $$D && $(MAKE) clean ) ;\
 	    x=$$? ; if [ $$x -ne 0 ]; then exit $$x ; fi \
 	    fi ;\
 	done
 	touch non-empty-rm.o
 	- find . -name \*.o -print | xargs rm
 
 SCRIPT_FILES = \
         agpToLift \
+        bedCollapse.pl \
         iSync \
         lodToBedScore \
 	mkMafFrames.pl
 
 # List of directories to build
 USE_DIRS = $(DIRS)
 
 DIRS = \
 	aNotB \
 	addCols \
 	ave \
 	aveCols \
 	bedClip \
 	bedCommonRegions \
 	bedGeneParts \