0eab84a29c2787d3326523d37263cc1eddaaadfc
rhead
  Fri Jul 29 15:07:46 2011 -0700
Made a grep check for a whole word match.  The hg19Patch5 database was wreaking havoc when this was run on hg19.
diff --git src/utils/qa/checkSync.csh src/utils/qa/checkSync.csh
index b633b60..e169679 100755
--- src/utils/qa/checkSync.csh
+++ src/utils/qa/checkSync.csh
@@ -69,31 +69,31 @@
     echo
     echo ' the fourth argument must be "times"\n'
     echo ${0}:
     $0
     exit 1
   endif
 endif
 
 # get tablenames for stripping out genbank
 rm -f genbank.local$$
 cat $GENBANK | sed -e 's/^^//; s/.$//' > genbank.local$$
 echo gbLoaded >> genbank.local$$
 
 # 
 set active=`hgsql -h $sqlbeta -Ne "SELECT name FROM dbDb where active = 1" hgcentralbeta \
-  | grep $db`
+  | grep -w $db`
 foreach machine ( $mach1 $mach2 )
   # check if db is for active assembly on beta
   # (if not, can't do real-time check)
   if ( $db == $active ) then
     # get the full table status in real time
     getTableStatus.csh $db $machine > $machine.tmp$$
     if ( $status ) then
       cat $machine.tmp$$
       rm $machine.tmp$$
 
       exit 1
     endif
   else
     # db is either not active, or not an assembly.  must use status dumps.
     cp `getRRdumpfile.csh $db $machine` $machine.tmp$$
