84fc7dd7df5303df374f00530a8d590ae550e5db
angie
  Wed Aug 10 08:12:11 2011 -0700
Feature #3710 (vcfTabix UI options): added option to use pgSnp colors instead of blueRef/redAlt in haplotype sorting display.
diff --git src/hg/inc/vcfUi.h src/hg/inc/vcfUi.h
index fa28053..02e5afd 100644
--- src/hg/inc/vcfUi.h
+++ src/hg/inc/vcfUi.h
@@ -1,23 +1,27 @@
 /* vcfUi - Variant Call Format user interface controls that are shared
  * between more than one CGI. */
 #ifndef VCFUI_H
 #define VCFUI_H
 
 #include "cart.h"
 #include "trackDb.h"
 #include "vcf.h"
 
 #define VCF_HAP_HEIGHT_VAR "hapClusterHeight"
 #define VCF_DEFAULT_HAP_HEIGHT 128
 
 #define VCF_HAP_ENABLED_VAR "hapClusterEnabled"
 
+#define VCF_HAP_COLORBY_VAR "hapClusterColorBy"
+#define VCF_HAP_COLORBY_REFALT "refAlt"
+#define VCF_HAP_COLORBY_BASE "base"
+
 void vcfCfgHaplotypeCenter(struct cart *cart, struct trackDb *tdb, struct vcfFile *vcff,
 			   char *thisName, char *thisChrom, int thisPos, char *formName);
 /* If vcff has genotype data, show status and controls for choosing the center variant
  * for haplotype clustering/sorting in hgTracks. */
 
 void vcfCfgUi(struct cart *cart, struct trackDb *tdb, char *name, char *title, boolean boxed);
 /* Complete track controls for VCF. */
 
 #endif//def VCF_UI