e27ed8ff23041752d3d45ccce1c4cd31dfe7bcb7 angie Wed Aug 17 16:55:50 2011 -0700 Sheesh, forgot a .h file for last-minute tweak. At least I haven't pushed yet! :) diff --git src/lib/vcf.c src/lib/vcf.c index e88de56..8b610ba 100644 --- src/lib/vcf.c +++ src/lib/vcf.c @@ -1,21 +1,22 @@ /* VCF: Variant Call Format, version 4.0 / 4.1 * http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-40 * http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41 */ #include "common.h" +#include "dnautil.h" #include "errabort.h" #include #include "localmem.h" #include "net.h" #include "regexHelper.h" #include "vcf.h" /* Reserved but optional INFO keys: */ const char *vcfInfoAncestralAllele = "AA"; const char *vcfInfoPerAlleleGtCount = "AC"; // allele count in genotypes, for each ALT allele, // in the same order as listed const char *vcfInfoAlleleFrequency = "AF"; // allele frequency for each ALT allele in the same // order as listed: use this when estimated from // primary data, not called genotypes const char *vcfInfoNumAlleles = "AN"; // total number of alleles in called genotypes