File Changes for cricket

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v257_preview2 to v257_base (2011-09-13 to 2011-09-19) v257

src/hg/encode/DAFs/2.0/affyRnaChip.daf
- lines changed 38, context: html, text, full: html, text
  Put replicate 5 in the attic and changed short labels according to Kate instructions on track 43
src/hg/encode/DAFs/2.0/cshlLongElements.daf
- lines changed 76, context: html, text, full: html, text
  Put replicate 5 in the attic and changed short labels according to Kate instructions on track 43
src/hg/encode/DAFs/2.0/cshlLongSpikeIns.daf
- lines changed 42, context: html, text, full: html, text
  Put replicate 5 in the attic and changed short labels according to Kate instructions on track 43
src/hg/encode/DAFs/2.0/gisDnaPet.daf
- lines changed 73, context: html, text, full: html, text
  Put replicate 5 in the attic and changed short labels according to Kate instructions on track 43
src/hg/encode/DAFs/2.0/haibMethylRrbs.daf
- lines changed 34, context: html, text, full: html, text
  Put replicate 5 in the attic and changed short labels according to Kate instructions on track 43
src/hg/encode/DAFs/2.0/sunySwitchgear.daf
- lines changed 35, context: html, text, full: html, text
  Put replicate 5 in the attic and changed short labels according to Kate instructions on track 43
src/hg/encode/DAFs/2.0/wgEncodeAffyRnaChip.daf
- lines changed 38, context: html, text, full: html, text
  Put replicate 5 in the attic and changed short labels according to Kate instructions on track 43
src/hg/encode/DAFs/2.0/wgEncodeGisDnaPet.daf
- lines changed 73, context: html, text, full: html, text
  Put replicate 5 in the attic and changed short labels according to Kate instructions on track 43
src/hg/encode/DAFs/2.0/wgEncodeHaibMethylRrbs.daf
- lines changed 34, context: html, text, full: html, text
  Put replicate 5 in the attic and changed short labels according to Kate instructions on track 43
src/hg/encode/DAFs/2.0/wgEncodeSunySwitchgear.daf
- lines changed 35, context: html, text, full: html, text
  Put replicate 5 in the attic and changed short labels according to Kate instructions on track 43
src/hg/encode/DAFs/3.0/hg19/wgEncodeAffyRnaChip.daf
- lines changed 38, context: html, text, full: html, text
  Moving the hg19 into the new directory
- lines changed 2, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeBroadHistone.daf
- lines changed 54, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeBroadHmm.daf
- lines changed 23, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeCaltechRnaSeq.daf
- lines changed 146, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlLongRnaSeq.daf
- lines changed 62, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlShortRnaSeq.daf
- lines changed 81, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeDukeAffyExon.daf
- lines changed 23, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeGencodeV7.daf
- lines changed 0, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeGisChiaPet.daf
- lines changed 60, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeGisDnaPet.daf
- lines changed 73, context: html, text, full: html, text
  Moving the hg19 into the new directory
- lines changed 1, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeGisRnaPet.daf
- lines changed 72, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeHaibGenotype.daf
- lines changed 44, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeHaibMethyl27.daf
- lines changed 40, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeHaibMethyl450.daf
- lines changed 39, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeHaibMethylRrbs.daf
- lines changed 34, context: html, text, full: html, text
  Moving the hg19 into the new directory
- lines changed 1, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeHaibRnaSeq.daf
- lines changed 65, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeHaibTfbs.daf
- lines changed 59, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeMapability.daf
- lines changed 23, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeOpenChromChip.daf
- lines changed 62, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeOpenChromDnase.daf
- lines changed 63, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeOpenChromFaire.daf
- lines changed 60, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeRikenCage.daf
- lines changed 70, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeSunyAlbanyGeneSt.daf
- lines changed 22, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeSunyAlbanyTiling.daf
- lines changed 25, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeSunyRipSeq.daf
- lines changed 51, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeSunySwitchgear.daf
- lines changed 35, context: html, text, full: html, text
  Moving the hg19 into the new directory
- lines changed 1, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeSydhHistone.daf
- lines changed 58, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeSydhNsome.daf
- lines changed 46, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeSydhTfbs.daf
- lines changed 56, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeUchicagoTfbs.daf
- lines changed 60, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeUmMassWengTfbsValid.daf
- lines changed 25, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeUmassDekker5C.daf
- lines changed 23, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeUncBsuProt.daf
- lines changed 39, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeUw5C.daf
- lines changed 28, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeUwAffyExonArray.daf
- lines changed 35, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeUwDgf.daf
- lines changed 70, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeUwDnase.daf
- lines changed 61, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodeUwHistone.daf
- lines changed 58, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/hg19/wgEncodebuOrchid.daf
- lines changed 33, context: html, text, full: html, text
  Starting the 3.0 DAF directory for hg19
src/hg/encode/DAFs/3.0/mm9/wgEncodeCaltechHist.daf
- lines changed 62, context: html, text, full: html, text
  Making the 3.0 daf directory for mm9
src/hg/encode/DAFs/3.0/mm9/wgEncodeCaltechHistone.daf
- lines changed 62, context: html, text, full: html, text
  Making the 3.0 daf directory for mm9
src/hg/encode/DAFs/3.0/mm9/wgEncodeCaltechTfbs.daf
- lines changed 62, context: html, text, full: html, text
  Making the 3.0 daf directory for mm9
src/hg/encode/DAFs/3.0/mm9/wgEncodeLicrHistone.daf
- lines changed 59, context: html, text, full: html, text
  Making the 3.0 daf directory for mm9
src/hg/encode/DAFs/3.0/mm9/wgEncodeLicrRnaSeq.daf
- lines changed 58, context: html, text, full: html, text
  Making the 3.0 daf directory for mm9
src/hg/encode/DAFs/3.0/mm9/wgEncodeLicrTfbs.daf
- lines changed 57, context: html, text, full: html, text
  Making the 3.0 daf directory for mm9
src/hg/encode/DAFs/3.0/mm9/wgEncodePsuHistone.daf
- lines changed 68, context: html, text, full: html, text
  Making the 3.0 daf directory for mm9
src/hg/encode/DAFs/3.0/mm9/wgEncodePsuTfbs.daf
- lines changed 67, context: html, text, full: html, text
  Making the 3.0 daf directory for mm9
src/hg/encode/DAFs/3.0/mm9/wgEncodeSydhHist.daf
- lines changed 63, context: html, text, full: html, text
  Making the 3.0 daf directory for mm9
src/hg/encode/DAFs/3.0/mm9/wgEncodeSydhRnaSeq.daf
- lines changed 57, context: html, text, full: html, text
  Making the 3.0 daf directory for mm9
src/hg/encode/DAFs/3.0/mm9/wgEncodeSydhTfbs.daf
- lines changed 63, context: html, text, full: html, text
  Making the 3.0 daf directory for mm9
src/hg/encode/DAFs/3.0/mm9/wgEncodeUwDfg.daf
- lines changed 76, context: html, text, full: html, text
  Making the 3.0 daf directory for mm9
src/hg/encode/DAFs/3.0/mm9/wgEncodeUwDnase.daf
- lines changed 63, context: html, text, full: html, text
  Making the 3.0 daf directory for mm9
src/hg/encode/DAFs/3.0/mm9/wgEncodeUwRnaSeq.daf
- lines changed 69, context: html, text, full: html, text
  Making the 3.0 daf directory for mm9
src/hg/encode/DAFs/3.0/mm9/wgEncodeUwTfbs.daf
- lines changed 65, context: html, text, full: html, text
  Making the 3.0 daf directory for mm9
src/hg/encode/DAFs/3.0/wgEncodeAffyRnaChip.daf
- lines changed 38, context: html, text, full: html, text
  Moving to the next generation of DAFs
- lines changed 38, context: html, text, full: html, text
  Moving the hg19 into the new directory
src/hg/encode/DAFs/3.0/wgEncodeGisDnaPet.daf
- lines changed 73, context: html, text, full: html, text
  Moving to the next generation of DAFs
- lines changed 73, context: html, text, full: html, text
  Moving the hg19 into the new directory
src/hg/encode/DAFs/3.0/wgEncodeHaibMethylRrbs.daf
- lines changed 34, context: html, text, full: html, text
  Moving to the next generation of DAFs
- lines changed 34, context: html, text, full: html, text
  Moving the hg19 into the new directory
src/hg/encode/DAFs/3.0/wgEncodeSunySwitchgear.daf
- lines changed 35, context: html, text, full: html, text
  Moving to the next generation of DAFs
- lines changed 35, context: html, text, full: html, text
  Moving the hg19 into the new directory
src/hg/encode/encodeMkChangeNotes/encodeMkChangeNotes
- lines changed 1, context: html, text, full: html, text
  Trying to make release 2 have the path information
src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlLongRnaSeq.release1.notes
- lines changed 7, context: html, text, full: html, text
  I know the spikeins do not have bai files, they are not for display
- lines changed 7, context: html, text, full: html, text
  Resolving merge conflict
- lines changed 5, context: html, text, full: html, text
  Finishing the dropping of the 3 orphan files
src/hg/makeDb/trackDb/cv/alpha/cv.ra
- lines changed 2, context: html, text, full: html, text
  BioRep should not be just for transcriptome project
src/hg/makeDb/trackDb/human/hg18/wgEncodeAffyRnaChip.ra
- lines changed 1, context: html, text, full: html, text
  Adding in the commented out fileSortOrder line in case we want to leak this ever
src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.new.ra
- lines changed 1, context: html, text, full: html, text
  Adding in the commented out fileSortOrder line in case we want to leak this ever
src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlLongRnaSeq.ra
- lines changed 1, context: html, text, full: html, text
  Adding in the commented out fileSortOrder line in case we want to leak this ever
src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.ra
- lines changed 1, context: html, text, full: html, text
  Adding in the commented out fileSortOrder line in case we want to leak this ever
src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.ra
- lines changed 1, context: html, text, full: html, text
  Adding in the commented out fileSortOrder line in case we want to leak this ever
src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.ra
- lines changed 1, context: html, text, full: html, text
  Adding in the commented out fileSortOrder line in case we want to leak this ever
src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.ra
- lines changed 1, context: html, text, full: html, text
  Adding in the commented out fileSortOrder line in case we want to leak this ever
src/hg/makeDb/trackDb/human/hg18/wgEncodeHelicosRnaSeq.ra
- lines changed 1, context: html, text, full: html, text
  Adding in the commented out fileSortOrder line in case we want to leak this ever
src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.ra
- lines changed 2, context: html, text, full: html, text
  Adding in the commented out fileSortOrder line in case we want to leak this ever
src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaMethylSeq.new.ra
- lines changed 1, context: html, text, full: html, text
  Adding in the commented out fileSortOrder line in case we want to leak this ever
src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.ra
- lines changed 1, context: html, text, full: html, text
  Adding in the commented out fileSortOrder line in case we want to leak this ever
src/hg/makeDb/trackDb/human/hg18/wgEncodeMapability.ra
- lines changed 1, context: html, text, full: html, text
  Adding in the commented out fileSortOrder line in case we want to leak this ever
src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.ra
- lines changed 1, context: html, text, full: html, text
  Adding in the commented out fileSortOrder line in case we want to leak this ever
src/hg/makeDb/trackDb/human/hg18/wgEncodeUwChIPSeq.ra
- lines changed 1, context: html, text, full: html, text
  Adding in the commented out fileSortOrder line in case we want to leak this ever
src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDGF.ra
- lines changed 1, context: html, text, full: html, text
  Adding in the commented out fileSortOrder line in case we want to leak this ever
src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.new.ra
- lines changed 1, context: html, text, full: html, text
  Adding in the commented out fileSortOrder line in case we want to leak this ever
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
- lines changed 71, context: html, text, full: html, text
  Put replicate 5 in the attic and changed short labels according to Kate instructions on track 43
- lines changed 276, context: html, text, full: html, text
  Adding the bioRep and labId to the Protocol Docs
- lines changed 78, context: html, text, full: html, text
  removing 3 orphan objects, see track #43
- lines changed 53, context: html, text, full: html, text
  Finishing the dropping of the 3 orphan files
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra
- lines changed 17, context: html, text, full: html, text
  removing run from the file, storing in labExpId
src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.html
- lines changed 5, context: html, text, full: html, text
  Changed the min and max display, dropped the reference to pink and purple, dropped some of the color tools
src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra
- lines changed 101, context: html, text, full: html, text
  Put replicate 5 in the attic and changed short labels according to Kate instructions on track 43
- lines changed 7, context: html, text, full: html, text
  Changed the min and max display, dropped the reference to pink and purple, dropped some of the color tools
src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.new.ra
- lines changed 6, context: html, text, full: html, text
  Getting rid of the - in H1-hESC
src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.ra
- lines changed 3, context: html, text, full: html, text
  I meant to make these changes on .new.ra

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