File Changes for mmaddren

v257_preview2 to v257_base (2011-09-13 to 2011-09-19) v257

• python/lib/ucscgenomics/bed.py
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    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/compositetrack/CompositeTrack.py
  • lines changed 228, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/compositetrack/__init__.py
  • lines changed 0, context: html, text, full: html, text
    removed additional extra files
• python/lib/ucscgenomics/cv.py
  • lines changed 507, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/cvfile/CvFile.py
  • lines changed 504, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/cvfile/__init__.py
  • lines changed 0, context: html, text, full: html, text
    removed extraneous files
• python/lib/ucscgenomics/cvfile/unittest/input/Antibody/BlankKey.ra
  • lines changed 25, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/cvfile/unittest/input/Antibody/ExtraKey.ra
  • lines changed 26, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/cvfile/unittest/input/Antibody/MissingKey.ra
  • lines changed 24, context: html, text, full: html, text
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• python/lib/ucscgenomics/cvfile/unittest/input/Antibody/NonmatchKey.ra
  • lines changed 25, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/cvfile/unittest/input/Antibody/ValidStanza.ra
  • lines changed 36, context: html, text, full: html, text
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• python/lib/ucscgenomics/cvfile/unittest/input/CellLine/BlankKey.ra
  • lines changed 34, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/cvfile/unittest/input/CellLine/ExtraKey.ra
  • lines changed 35, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/cvfile/unittest/input/CellLine/MissingKey.ra
  • lines changed 33, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/cvfile/unittest/input/CellLine/NonmatchKey.ra
  • lines changed 34, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/cvfile/unittest/input/CellLine/ValidStanza.ra
  • lines changed 33, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/cvfile/unittest/input/Mouse/BlankKey.ra
  • lines changed 37, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/cvfile/unittest/input/Mouse/ExtraKey.ra
  • lines changed 38, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/cvfile/unittest/input/Mouse/MissingKey.ra
  • lines changed 36, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/cvfile/unittest/input/Mouse/NonmatchKey.ra
  • lines changed 37, context: html, text, full: html, text
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• python/lib/ucscgenomics/cvfile/unittest/input/Mouse/ValidStanza.ra
  • lines changed 37, context: html, text, full: html, text
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• python/lib/ucscgenomics/cvfile/unittest/testCvFile
  • lines changed 95, context: html, text, full: html, text
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• python/lib/ucscgenomics/ordereddict.py
  • lines changed 58, context: html, text, full: html, text
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• python/lib/ucscgenomics/ordereddict/OrderedDict.py
  • lines changed 58, context: html, text, full: html, text
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• python/lib/ucscgenomics/ordereddict/__init__.py
  • lines changed 0, context: html, text, full: html, text
    removed additional extra files
• python/lib/ucscgenomics/ra.py
  • lines changed 214, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
  • lines changed 5, context: html, text, full: html, text
    ra file updated
• python/lib/ucscgenomics/rafile/RaFile.py
  • lines changed 214, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/__init__.py
  • lines changed 0, context: html, text, full: html, text
    removed extraneous files
• python/lib/ucscgenomics/rafile/unittest/testRaFile.py
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• python/lib/ucscgenomics/rafile/unittest/testoutput/BasicDiff.out
  • lines changed 27, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/testoutput/CommentsDiff.out
  • lines changed 31, context: html, text, full: html, text
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• python/lib/ucscgenomics/rafile/unittest/testoutput/DeleteItem.out
  • lines changed 39, context: html, text, full: html, text
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• python/lib/ucscgenomics/rafile/unittest/testoutput/ExtraneousWhitespace.out
  • lines changed 70, context: html, text, full: html, text
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• python/lib/ucscgenomics/rafile/unittest/testoutput/GetItem.out
  • lines changed 13, context: html, text, full: html, text
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• python/lib/ucscgenomics/rafile/unittest/testoutput/InlineCommentsDiff.out
  • lines changed 27, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/testoutput/IterEntryItems.out
  • lines changed 27, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/testoutput/IterEntryKeys.out
  • lines changed 27, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/testoutput/IterEntryValues.out
  • lines changed 27, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/testoutput/IterItems.out
  • lines changed 19, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/testoutput/IterKeys.out
  • lines changed 11, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/testoutput/IterValues.out
  • lines changed 41, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/tests/BasicDiff.ra
  • lines changed 12, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/tests/CommentsDiff.ra
  • lines changed 14, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/tests/DeleteItem.ra
  • lines changed 18, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/tests/DuplicateKeys.ra
  • lines changed 8, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/tests/FunctionalityCheck.ra
  • lines changed 23, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/tests/GetItem.ra
  • lines changed 5, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/tests/InlineCommentsDiff.ra
  • lines changed 12, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/tests/IterEntryItems.ra
  • lines changed 12, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/tests/IterEntryKeys.ra
  • lines changed 12, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/tests/IterEntryValues.ra
  • lines changed 12, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/tests/IterItems.ra
  • lines changed 8, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/tests/IterKeys.ra
  • lines changed 4, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/tests/IterValues.ra
  • lines changed 19, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/tests/MisplacedKeys.ra
  • lines changed 8, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/rafile/unittest/tests/NonNewlineFile.ra
  • lines changed 5, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/soft.py
  • lines changed 392, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/softfile/SoftFile.py
  • lines changed 392, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/softfile/__init__.py
  • lines changed 0, context: html, text, full: html, text
    removed extraneous files
• python/lib/ucscgenomics/softfile/unittest/testSoft
  • lines changed 10, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/styles.py
  • lines changed 38, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/test/test_cv
  • lines changed 95, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/test/test_cv_input/Antibody/BlankKey.ra
  • lines changed 25, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/test/test_cv_input/Antibody/ExtraKey.ra
  • lines changed 26, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/test/test_cv_input/Antibody/MissingKey.ra
  • lines changed 24, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/test/test_cv_input/Antibody/NonmatchKey.ra
  • lines changed 25, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/test/test_cv_input/Antibody/ValidStanza.ra
  • lines changed 36, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/test/test_cv_input/CellLine/BlankKey.ra
  • lines changed 34, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/test/test_cv_input/CellLine/ExtraKey.ra
  • lines changed 35, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/test/test_cv_input/CellLine/MissingKey.ra
  • lines changed 33, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/test/test_cv_input/CellLine/NonmatchKey.ra
  • lines changed 34, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/test/test_cv_input/CellLine/ValidStanza.ra
  • lines changed 33, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/test/test_cv_input/Mouse/BlankKey.ra
  • lines changed 37, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/test/test_cv_input/Mouse/ExtraKey.ra
  • lines changed 38, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/lib/ucscgenomics/test/test_cv_input/Mouse/MissingKey.ra
  • lines changed 36, context: html, text, full: html, text
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• python/lib/ucscgenomics/test/test_cv_input/Mouse/NonmatchKey.ra
  • lines changed 37, context: html, text, full: html, text
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• python/lib/ucscgenomics/test/test_cv_input/Mouse/ValidStanza.ra
  • lines changed 37, context: html, text, full: html, text
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• python/lib/ucscgenomics/test/test_ra
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• python/lib/ucscgenomics/test/test_ra_file/testoutput/BasicDiff.out
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• python/lib/ucscgenomics/test/test_ra_file/testoutput/CommentsDiff.out
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• python/lib/ucscgenomics/test/test_ra_file/testoutput/DeleteItem.out
  • lines changed 39, context: html, text, full: html, text
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• python/lib/ucscgenomics/test/test_ra_file/testoutput/ExtraneousWhitespace.out
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• python/lib/ucscgenomics/test/test_ra_file/testoutput/GetItem.out
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• python/lib/ucscgenomics/test/test_ra_file/testoutput/InlineCommentsDiff.out
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• python/lib/ucscgenomics/test/test_ra_file/testoutput/IterEntryItems.out
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• python/lib/ucscgenomics/test/test_ra_file/testoutput/IterEntryKeys.out
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• python/lib/ucscgenomics/test/test_ra_file/testoutput/IterEntryValues.out
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• python/lib/ucscgenomics/test/test_ra_file/testoutput/IterItems.out
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• python/lib/ucscgenomics/test/test_ra_file/testoutput/IterKeys.out
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• python/lib/ucscgenomics/test/test_ra_file/testoutput/IterValues.out
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• python/lib/ucscgenomics/test/test_ra_input/BasicDiff.ra
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• python/lib/ucscgenomics/test/test_ra_input/CommentsDiff.ra
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• python/lib/ucscgenomics/test/test_ra_input/DeleteItem.ra
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• python/lib/ucscgenomics/test/test_ra_input/DuplicateKeys.ra
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• python/lib/ucscgenomics/test/test_ra_input/FunctionalityCheck.ra
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• python/lib/ucscgenomics/test/test_ra_input/GetItem.ra
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• python/lib/ucscgenomics/test/test_ra_input/InlineCommentsDiff.ra
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• python/lib/ucscgenomics/test/test_ra_input/IterEntryItems.ra
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• python/lib/ucscgenomics/test/test_ra_input/IterEntryKeys.ra
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• python/lib/ucscgenomics/test/test_ra_input/IterEntryValues.ra
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• python/lib/ucscgenomics/test/test_ra_input/IterItems.ra
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• python/lib/ucscgenomics/test/test_ra_input/IterKeys.ra
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• python/lib/ucscgenomics/test/test_ra_input/IterValues.ra
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• python/lib/ucscgenomics/test/test_ra_input/MisplacedKeys.ra
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• python/lib/ucscgenomics/test/test_ra_input/NonNewlineFile.ra
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• python/lib/ucscgenomics/test/test_soft
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• python/lib/ucscgenomics/textstyle.py
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• python/lib/ucscgenomics/textstyle/TextStyle.py
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• python/lib/ucscgenomics/textstyle/__init__.py
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• python/lib/ucscgenomics/track.py
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• python/programs/cvValidate/cvValidate
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• python/programs/mkChangeNotes/mkChangeNotes
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• python/programs/mkGeoPkg/mkGeoPkg
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    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/programs/mkGeoPkg/trackInfo
  • lines changed 183, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• python/programs/trackInfo/trackInfo
  • lines changed 179, context: html, text, full: html, text
    large-scale renaming change to allow python to be built into cluster/bin, also mkGeoPkg now renames files
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra
  • lines changed 109, context: html, text, full: html, text
    Willys changes to add geo accession numbers to Sydh submissions
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 19, context: html, text, full: html, text
    Willys changes to add geo accession numbers to Sydh submissions