Commits for wong

v257_preview2 to v257_base (2011-09-13 to 2011-09-19) v257

• html changes
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.html - lines changed 12, context: html, text, full: html, text
• hopefully this corrects the nfkb to nkfb error, there was a bad name change a while ago
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeSydhTfbs.release1.notes - lines changed 1572, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 191, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 18, context: html, text, full: html, text
• turned on defaults on SYDH TFBS Rad21 Pol2 TBP and CHD@ on K562 and GM12878
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 28, context: html, text, full: html, text
• merged release 1 settings with release 2 stub
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra - lines changed 5425, context: html, text, full: html, text
• added 4462
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 129, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra - lines changed 19, context: html, text, full: html, text
• changed shortlabels to be consistent and changed the method to handle Lab Rep in long and short, and some long label changes to be consistent
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 107, context: html, text, full: html, text
• removed Rep5 stuff from Cshl Long, tablename and objtype=file
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 15, context: html, text, full: html, text
• hacked encodeMkChangeNotes to remove duplicate entries, can't figure out why it's doing it, so no patch, just hack
  • src/hg/encode/encodeMkChangeNotes/encodeMkChangeNotes - lines changed 25, context: html, text, full: html, text
• removed duplicated files
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlLongRnaSeq.release1.notes - lines changed 438, context: html, text, full: html, text
• corrected some filtering options that was blocking checkboxes
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 2, context: html, text, full: html, text
• removed warings that aren't really warnings
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlLongRnaSeq.release1.notes - lines changed 363, context: html, text, full: html, text
• removed tableName from GencV7 entries
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 62, context: html, text, full: html, text
• removed erroneous table
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlLongRnaSeq.release1.notes - lines changed 4, context: html, text, full: html, text
• all warnings resolved
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlLongRnaSeq.release1.notes - lines changed 8, context: html, text, full: html, text
• merge fix
• something went wrong with my last long label attempt. this one is good.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 17, context: html, text, full: html, text
• reput in tablenames for junctions, that got rolled back with a bad make
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 55, context: html, text, full: html, text
• updated md5sums for SYDH TFBS
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 7, context: html, text, full: html, text
• revoked in the wrong trackDb, rolled back .ra revoked in .new.ra
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.new.ra - lines changed 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 14, context: html, text, full: html, text
• added provisional tags to 5c's cv entries
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• added in 3 functions, custom history file, silencing mdbupdates, and if updated metaDb, it will also attempt to print back out the .ra file
  • src/hg/encode/encodeMkFilesList/encodeMkFilesList - lines changed 55, context: html, text, full: html, text
• prety sure I made the same mistake with leaking out a revoke for rep 1 on august 8's commit, re adding it now
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 14, context: html, text, full: html, text
• the E2f6 > E2f6sc22823 didn't make it to the .new.ra
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.new.ra - lines changed 4, context: html, text, full: html, text