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To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the genome-announce mailing list. - - -- 16 June 2011 - -Re-engineered OMIM Tracks Released - - We announce today the release of our newly re-engineered OMIM - (Online Mendelian Inheritance in Man) tracks for both hg18 and - hg19. With the kind assistance of Ada Hamosh (director), - Joanna Amberger and Francois Schiettecatte of the OMIM project, - we have divided the OMIM records into three separate tracks: - +
- OMIM Allelic Variant SNPs
- We are pleased to announce a new feature in the UCSC Genome Browser: + Track Data Hubs. Track hubs are web-accessible directories of genomic data + that can be viewed on the UCSC Genome Browser alongside native annotation + tracks. The Track Hub utility allows efficient access to data sets from around + the world through the familiar Genome Browser interface. Browser users + can display tracks from any public track hub that has been registered + with UCSC. Additionally, users can import data from unlisted hubs or can + set up, display, and share their own track hubs. - -
- OMIM Genes
- The data underlying the tracks in a hub reside on the remote server of + the data provider rather than at UCSC. The data are stored in compressed + binary indexed files in bigBed, bigWig or BAM format that contain the + data at several resolutions. When a hub track is displayed in the Genome + Browser, only the relevant data needed to support the view of the + current genomic region are transmitted rather than the entire file. The + transmitted data are cached on the UCSC server to expedite future + access. This on-demand transfer mechanism eliminates the need to + transmit large data sets across the Internet, thereby minimizing upload + time into the browser. - -
- OMIM Phenotypes - Gene Unknown
- To check out some track data hubs that are already available, most + notably those from the NIH Roadmap Epigenomics Mapping Consortium, press + the "track hubs" button in the genome browser, or follow this link: + http://genome.ucsc.edu/cgi-bin/hgHubConnect - -- The new tracks can be found in the Phenotype and Disease Associations - track group below the browser graphic - and are searchable by OMIM number. In most cases, - simply typing the 6-digit MIM number into the position/search box - on the Browser will take you to the record. - - -- The OMIM data are the property of Johns Hopkins University and - will not be available for download from UCSC. Please contact the - OMIM project at omim.org for download information. + To read about using hubs, or creating your own, see the + User's Guide. ++ - UCSC thanks engineers Fan Hsu, Brooke Rhead and Robert Kuhn for - this release. - -+ 16 June 2011 - +Re-engineered OMIM Tracks Released: + We announce today the release of our newly re-engineered OMIM + (Online Mendelian Inheritance in Man) tracks for both hg18 and + hg19. + Read more. 9 June 2011 - UCSC Preview Browser Available: Early access to ENCODE and other UCSC browser data tracks under construction is now available from the new UCSC Preview Browser site: http://genome-preview.ucsc.edu. Read more. 7 June 2011 - Updated Lizard Browser Available: We have released a Genome Browser for the May 2010 genome assembly of the green anole lizard, Anolis carolinensis (Broad version AnoCar2.0, UCSC version anoCar2). Read more. - -- 26 May 2011 - New -Release of UCSC Genes for Mouse: - We've released an updated set of UCSC Genes for the mm9 - (NCBI Build 37) mouse Genome Browser. - Read more. - - ==> News Archives |