File Changes for cricket

v257_preview to v257_preview2 (2011-09-06 to 2011-09-13) v257

• src/hg/encode/metaCheck/README.txt
  • lines changed 20, context: html, text, full: html, text
    So the long awaited merge of metaTest into metaCheck is here. This is an arguments face lift because the original metaCheck was meant to be used in code not as a command line, so now there are defaults for all of the locations of the trackDb, metaDb, downloads dir but you can specify a different location.
• src/hg/encode/metaCheck/metaCheck.c
  • lines changed 95, context: html, text, full: html, text
    So the long awaited merge of metaTest into metaCheck is here. This is an arguments face lift because the original metaCheck was meant to be used in code not as a command line, so now there are defaults for all of the locations of the trackDb, metaDb, downloads dir but you can specify a different location.
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeCaltechRnaSeq.release2.notes
  • lines changed 10, context: html, text, full: html, text
    Replacing the 1x75-Directional-HepG2-rep2 and rep1
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibMethylRrbs.release2.notes
  • lines changed 917, context: html, text, full: html, text
    Adding the 4 new cell lines that would be Release 3
• src/hg/makeDb/mdbUpdate/mdbPrint.c
  • lines changed 1, context: html, text, full: html, text
    Changing the invalids line to have the same behaviour as the other notices
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 1, context: html, text, full: html, text
    MUNUS should be MINUS
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 58, context: html, text, full: html, text
    Replacing the 1x75-Directional-HepG2-rep2 and rep1
  • lines changed 61, context: html, text, full: html, text
    Adding the md5sums
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 55, context: html, text, full: html, text
    Added table names for the Junctions
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra
  • lines changed 1475, context: html, text, full: html, text
    Removed the unloaded data for Chia Pet
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 487, context: html, text, full: html, text
    Adding the 4 new cell lines that would be Release 3
  • lines changed 21, context: html, text, full: html, text
    Adding md5sums
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeYaleRnaSeq.ra
  • lines changed 258, context: html, text, full: html, text
    Remove the Yale mdb, it is SYDH
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.html
  • lines changed 3, context: html, text, full: html, text
    Fixing references
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.ra
  • lines changed 2, context: html, text, full: html, text
    Replacing the 1x75-Directional-HepG2-rep2 and rep1
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra
  • lines changed 296, context: html, text, full: html, text
    Changing long labels to have no Strand and to have lowercase polyA
  • lines changed 1, context: html, text, full: html, text
    One short label
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.html
  • lines changed 22, context: html, text, full: html, text
    Making changes for Jacob on ticket 1634
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra
  • lines changed 20, context: html, text, full: html, text
    wgEncodeCshlShortRnaSeq.new.html
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.html
  • lines changed 12, context: html, text, full: html, text
    Fixing references
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.html
  • lines changed 11, context: html, text, full: html, text
    Adding the 4 new cell lines that would be Release 3
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra
  • lines changed 134, context: html, text, full: html, text
    Adding the 4 new cell lines that would be Release 3
  • lines changed 81, context: html, text, full: html, text
    Fixing merge conflict
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra
  • lines changed 1, context: html, text, full: html, text
    Typo in HELAS3
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.new.html
  • lines changed 10, context: html, text, full: html, text
    Removing the view, since it is a single view track
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.new.ra
  • lines changed 5, context: html, text, full: html, text
    Trying to fix the Tier 1 and Tier 2 mistake that I put in the .ra instead of the .new.ra
  • lines changed 67, context: html, text, full: html, text
    Removing the view, since it is a single view track
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 9, context: html, text, full: html, text
    Trying to fix the Tier 1 and Tier 2 mistake that I put in the .ra instead of the .new.ra
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhRnaSeq.html
  • lines changed 2, context: html, text, full: html, text
    Change Peggy's link to USC
  • lines changed 8, context: html, text, full: html, text
    Ticket 383, changing the html and the view limits per Katrina requests
  • lines changed 4, context: html, text, full: html, text
    Resolving merge conflict
  • lines changed 2, context: html, text, full: html, text
    Fixed a broken link and changed Seq to seq and dropped orig assembly
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhRnaSeq.ra
  • lines changed 1, context: html, text, full: html, text
    Ticket 383, changing the html and the view limits per Katrina requests
  • lines changed 12, context: html, text, full: html, text
    Fixed a broken link and changed Seq to seq and dropped orig assembly
• src/hg/makeDb/trackDb/human/hg19/wgEncodeYaleRnaSeq.html
  • lines changed 147, context: html, text, full: html, text
    Removed the html that goes with the deprecated track