034d73b0dc21e05f327a16a004d13cb5693f89f7 donnak Thu Sep 8 17:34:46 2011 -0700 Added news about new javascript features, archived some items. diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 495a3a1..7622044 100644 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -14,87 +14,87 @@ </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="https://lists.soe.ucsc.edu/mailman/listinfo/genome-announce" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> - - <!-- Data Hubs --> + <!-- New javascript features --> <P> - <FONT FACE="courier" SIZE="3"><B>18 August 2011 - -New Feature: Track Data Hubs </B></FONT> - <P>We are pleased to announce a new feature in the UCSC Genome Browser: - Track Data Hubs. Track hubs are web-accessible directories of genomic data - that can be viewed on the UCSC Genome Browser alongside native annotation - tracks. The Track Hub utility allows efficient access to data sets from around - the world through the familiar Genome Browser interface. Browser users - can display tracks from any public track hub that has been registered - with UCSC. Additionally, users can import data from unlisted hubs or can - set up, display, and share their own track hubs. - </P> - <P>The data underlying the tracks in a hub reside on the remote server of - the data provider rather than at UCSC. The data are stored in compressed - binary indexed files in bigBed, bigWig or BAM format that contain the - data at several resolutions. When a hub track is displayed in the Genome - Browser, only the relevant data needed to support the view of the - current genomic region are transmitted rather than the entire file. The - transmitted data are cached on the UCSC server to expedite future - access. This on-demand transfer mechanism eliminates the need to - transmit large data sets across the Internet, thereby minimizing upload - time into the browser. - </P> - <P>To check out some track data hubs that are already available, most - notably those from the NIH Roadmap Epigenomics Mapping Consortium, press - the "track hubs" button in the genome browser, or follow this link: - <A HREF="/cgi-bin/hgHubConnect">http://genome.ucsc.edu/cgi-bin/hgHubConnect</A> - </P> - <P>To read about using hubs, or creating your own, see the - <A HREF="/goldenPath/help/hgTrackHubHelp.html">User's Guide</A>. - </P> - <HR> - - <!-- OMIM release --> + <FONT FACE="courier" SIZE="3"><B>8 Sept. 2011 - +New Navigation and Display Features </B></FONT> <P> - <FONT FACE="courier" SIZE="3"><B>16 June 2011 - -Re-engineered OMIM Tracks Released:</B></FONT> - We announce today the release of our newly re-engineered OMIM - (Online Mendelian Inheritance in Man) tracks for both hg18 and - hg19. - <A HREF="goldenPath/newsarch.html#061611">Read more</A>. - - <!-- Preview Browser --> + We've added several new features to the Genome Browser + that make it easier to quickly configure and navigate + around in the browser's annotation tracks window. <P> - <FONT FACE="courier" SIZE="3"><B>9 June 2011 - -UCSC Preview Browser Available:</B></FONT> - Early access to ENCODE and other UCSC browser data tracks under - construction is now available from the new UCSC Preview Browser site: - <A HREF="http://genome-preview.ucsc.edu">http://genome-preview.ucsc.edu</A>. - <A HREF="goldenPath/newsarch.html#060911">Read more</A>. - </P> - + <B>Automatic image resizing:</B> The first time the annotation + track window is displayed, or after the Genome Browser has + been reset, the size of the track window is now set by + default to the width that best fits your Internet browser + window. If you subsequently resize your browser window, + you can automatically adjust the annotation track image + size to the new width by clicking the <em>resize</em> button + under the track image. The default width can still be + manually overridden on the Track Configuration page. + <P> + <B>Scrolling left or right in the track window:</B> You can now + scroll (pan) horizontally through the tracks image by clicking + on the image, dragging the cursor to the left or right, + then releasing the mouse button. The view may be scrolled + by up to one image width. + <P> + <B>Improved drag-zoom navigation:</B> The browser's + "drag-and-zoom" feature lets you quickly zoom to a + specific region of interest on the annotation tracks image. + To define the region you wish to zoom to, click-and-hold + the mouse button on one edge of the desired zoom area + (which can be anywhere in the tracks window), depress the + shift key, drag the mouse right or left to highlight the + selection area, then release the mouse button. + The annotation tracks image will automatically zoom to + the new region. The Genome Browser still supports the + earlier implementation of this feature, which restricted + the click-drag to the Base Position track area of the image, + but did not require the shift key to be pressed. + <P> + <B>Reordering groups of tracks:</B> + You can now vertically reposition an entire group of + associated tracks in the tracks image (such as all the + displayed subtracks in a composite track) by clicking and + holding the gray bar to the left of the tracks, + dragging the group to the new position, then releasing + the mouse button. To move a single track up or down, click + and hold the mouse button on the side label, drag the + highlighted track to the new position, then release the + mouse button. + <P> + If you haven't yet tried the browser's right-click + menu for quick access to frequently used track + configuration features and functionality, read more + <A HREF="goldenPath/newsarch.html#011011">here</A>. + <HR> - <!-- anoCar2 Browser Release --> + <!-- data hubs release --> <P> - <FONT FACE="courier" SIZE="3"><B>7 June 2011 - -Updated Lizard Browser Available: </B></FONT> - We have released a Genome Browser for the May 2010 - genome assembly of the green anole lizard, <em>Anolis - carolinensis</em> (Broad - version AnoCar2.0, UCSC version anoCar2). - <A HREF="goldenPath/newsarch.html#060711">Read more</A>. + <FONT FACE="courier" SIZE="3"><B>18 August 2011 - +New Feature: Track Data Hubs: </B></FONT> + We are pleased to announce a new feature in the UCSC Genome Browser: Track Data Hubs. Track hubs are web-accessible directories of genomic data + that can be viewed on the UCSC Genome Browser alongside native annotation + tracks. + <A HREF="goldenPath/newsarch.html#081811">Read more</A>. </P> ==> <a href="goldenPath/newsarch.html">News Archives</a> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>