File Changes for cline

v258_preview2 to v258_base (2011-10-04 to 2011-10-10) v258

• src/hg/hgc/hgc.c
  • lines changed 1, context: html, text, full: html, text
    In response to Redmine MLQ #5583 and a request from Brooke, reworded the error message to indicate that the problem may be that a sequence not found doesn't exist anymore (which is probably the case), to make it look less like a software bug (which it probably isn't)
• src/hg/makeDb/doc/hg19.txt
  • lines changed 20, context: html, text, full: html, text
    (1) Rebuilt the swissprot and proteins databases with new versions of the build scripts, (2) Rebuilt the Rfam alignments and updated the build process in hg19, (3) Modified the UCSC Genes build script to add the Rfam and tRNA transcripts to the txWalk transcripts (along with the antibodies) rather than using them as input to txWalk, (4) updated the new track details page based on feedback from Brooke
• src/hg/makeDb/doc/proteins/111004.txt
  • lines changed 641, context: html, text, full: html, text
    (1) Rebuilt the swissprot and proteins databases with new versions of the build scripts, (2) Rebuilt the Rfam alignments and updated the build process in hg19, (3) Modified the UCSC Genes build script to add the Rfam and tRNA transcripts to the txWalk transcripts (along with the antibodies) rather than using them as input to txWalk, (4) updated the new track details page based on feedback from Brooke
• src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes13.csh
  • lines changed 41, context: html, text, full: html, text
    (1) Rebuilt the swissprot and proteins databases with new versions of the build scripts, (2) Rebuilt the Rfam alignments and updated the build process in hg19, (3) Modified the UCSC Genes build script to add the Rfam and tRNA transcripts to the txWalk transcripts (along with the antibodies) rather than using them as input to txWalk, (4) updated the new track details page based on feedback from Brooke
• src/hg/makeDb/doc/uniProt/sp111004.txt
  • lines changed 50, context: html, text, full: html, text
    (1) Rebuilt the swissprot and proteins databases with new versions of the build scripts, (2) Rebuilt the Rfam alignments and updated the build process in hg19, (3) Modified the UCSC Genes build script to add the Rfam and tRNA transcripts to the txWalk transcripts (along with the antibodies) rather than using them as input to txWalk, (4) updated the new track details page based on feedback from Brooke
• src/hg/makeDb/trackDb/human/hg19/knownGeneNew.html
  • lines changed 54, context: html, text, full: html, text
    Changed some wording to address Jim's code review feedback, Redmine issue #5002, and other issues that Brooke suggested when I told her I was working on this page
  • lines changed 32, context: html, text, full: html, text
    (1) Rebuilt the swissprot and proteins databases with new versions of the build scripts, (2) Rebuilt the Rfam alignments and updated the build process in hg19, (3) Modified the UCSC Genes build script to add the Rfam and tRNA transcripts to the txWalk transcripts (along with the antibodies) rather than using them as input to txWalk, (4) updated the new track details page based on feedback from Brooke