File Changes for angie

v257_base to v258_preview (2011-09-19 to 2011-09-27) v258

• src/hg/lib/hgBam.c
  • lines changed 2, context: html, text, full: html, text
    Samtools CIGAR strings have two new opcodes: '=' for exactly matchingbases, 'X' for mismatching bases. These are more explicit versions of the 'M' opcode for matching and/or mismatching bases.
• src/inc/bamFile.h
  • lines changed 2, context: html, text, full: html, text
    Samtools CIGAR strings have two new opcodes: '=' for exactly matchingbases, 'X' for mismatching bases. These are more explicit versions of the 'M' opcode for matching and/or mismatching bases.
• src/lib/bamFile.c
  • lines changed 8, context: html, text, full: html, text
    Samtools CIGAR strings have two new opcodes: '=' for exactly matchingbases, 'X' for mismatching bases. These are more explicit versions of the 'M' opcode for matching and/or mismatching bases.