e4ebd36df9ba24360fa4d77a015d8b0cff911f62
chinhli
  Wed Sep 21 08:49:27 2011 -0700
Finished up the bigBed update approach for geneReviews track
diff --git src/hg/hgGene/geneReviews.c src/hg/hgGene/geneReviews.c
index 44ff0cd..aa64ec0 100644
--- src/hg/hgGene/geneReviews.c
+++ src/hg/hgGene/geneReviews.c
@@ -1,77 +1,79 @@
 /* GeneReviews - print out GeneReviews for this gene. */
 
 #include "common.h"
 #include "hash.h"
 #include "hdb.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "hgGene.h"
 
 static void geneReviewsPrint(struct section *section, 
 	struct sqlConnection *conn, char *itemName)
 /* print GeneReviews short label associated to this refGene item */
 {
 char query[256];
 char * geneSymbol;
-if (sqlTablesExist(conn, "geneReviews"))
+if (sqlTablesExist(conn, "geneReviewsRefGene"))
     {
     safef(query, sizeof(query), "select geneSymbol from kgXref where kgId = '%s'", itemName);
     geneSymbol = sqlQuickString(conn, query);
     if (geneSymbol != NULL)
         {
            prGRShortKg(conn,geneSymbol);
         } else {
-           hPrintf("<B>No GeneReviews for this gene </B><BR>" );
+           hPrintf("<B>No GeneReview for this gene </B><BR>" );
     }
   }
 }
 
 void prGRShortKg(struct sqlConnection *conn, char *itemName)
 /* print GeneReviews short label associated to this refGene item */
 {
 
 struct sqlResult *sr;
 char **row;
 char query[512];
 boolean firstTime = TRUE;
 
 safef(query, sizeof(query), "select  geneSymbol, grShort, diseaseID, diseaseName from geneReviewsRefGene where geneSymbol='%s'", itemName);
 sr = sqlGetResult(conn, query);
 while ((row = sqlNextRow(sr)) != NULL)
     {
       if (firstTime)
         {
-          printf("<B> Gene Symbol: </B>%s<BR>", row[0]);    
+          printf("<B>GeneReview(s) and GeneTest disease(s) related to gene  </B>%s:<BR>", row[0]);    
           firstTime = FALSE;
         }
-       printf("<A HREF=\"http://www.ncbi.nlm.nih.gov/books/n/gene/%s\" TARGET=_blank><B>%s:</B></A>",row[1], row[1]);
-       printf(" ( %s )<BR>", row[3]);
+       printf("<A HREF=\"http://www.ncbi.nlm.nih.gov/books/n/gene/%s\" TARGET=_blank><B>%s</B></A>",row[1], row[1]);
+       printf(" ("); 
+       printf("<A HREF=\"http://www.ncbi.nlm.nih.gov/sites/GeneTests/review/disease/%s?db=genetests&search_param==begins_with\" TARGET=_blank>%s</A>", row[3], row[3]);
+       printf(")<BR>");
      }
      sqlFreeResult(&sr);
 }
 
 static boolean geneReviewsExists(struct section *section,
         struct sqlConnection *conn, char *geneId)
-/* Return TRUE if geneReviews table exist and have GeneReviews articles
+/* Return TRUE if geneReviewsRefGene table exist and have GeneReviews articles
  * on this one. */
 {
 char query[256];
 char * geneSymbol;
 char * grSymbol;
 
-if (sqlTablesExist(conn, "geneReviews"))
+if (sqlTablesExist(conn, "geneReviewsRefGene"))
     {
        safef(query, sizeof(query), "select geneSymbol from kgXref where kgId = '%s'", geneId);
        geneSymbol = sqlQuickString(conn, query);
        if (geneSymbol != NULL)
           {
              safef(query, sizeof(query), "select  geneSymbol from geneReviewsRefGene where geneSymbol='%s'", geneSymbol);
              grSymbol = sqlQuickString(conn, query);
              if (grSymbol != NULL)
                 {
                   return TRUE;
                 }
            }
      }
 return FALSE;
 }