dac44e990b86650b4168048f3c7d43bf0be0f86b
chinhli
  Mon Aug 8 14:49:45 2011 -0700
initial geneReviews aork
diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c
index 36c755c..deacdd9 100644
--- src/hg/hgc/hgc.c
+++ src/hg/hgc/hgc.c
@@ -23749,30 +23749,86 @@
                hgTracksPathAndSettings(), database,
                bed->chrom, bed->chromStart+1, bed->chromEnd);
 
         printf("%-20s %-10s %9d  %9d    %5d    %5d    %1s",
             bed->name, bed->chrom, bed->chromStart+1, bed->chromEnd,
             (bed->chromEnd - bed->chromStart),bed->score, bed->strand);
 
         printf("</TT></PRE>");
         }
 
  printf("<BR>");
  printTrackHtml(tdb);
  hFreeConn(&conn);
 }
 
+void doGeneReviews(struct trackDb *tdb, char *itemName)
+/* generate the detail page for geneReviews */
+{
+struct sqlConnection *conn = hAllocConn(database);
+struct sqlResult *sr;
+char **row;
+//char *table = tdb->table;
+char query[512];
+int start = cartInt(cart, "o");
+int num = 4;
+int i;
+char *clickMsg = "Click 'Short name' link below to search GeneReviews";
+boolean firstTime = TRUE;
+
+genericHeader(tdb, itemName);
+genericBedClick(conn, tdb, itemName, start, num);
+
+printf("<BR><B> GeneReview available for %s:</B><BR>",itemName);
+printf("%s<BR>",clickMsg);
+safef(query, sizeof(query), "select  grShort, diseaseID, diseaseName from geneReviewsRefGene where geneSymbol='%s'", itemName);
+sr = sqlGetResult(conn, query);
+while ((row = sqlNextRow(sr)) != NULL)
+    {
+        char *grShort = *row++;
+        char *diseaseID = *row++;
+        char *diseaseName = *row++;
+
+
+        printf("<PRE>");
+        if (firstTime)
+        {
+        firstTime = FALSE;
+        
+            // #1234567890123456789012345678901234567890
+        printf("Short name               Disease ID       GeneTests disease name<BR>");
+        printf("-----------------------------------------------------------");
+        printf("-----------------------------------------------------------");  
+        printf("----------------------------------<BR>");
+        }      
+        printf("<A HREF=\"http://www.ncbi.nlm.nih.gov/books/n/gene/%s\" TARGET=_blank><B>%s</B></A>", grShort, grShort);
+        if (strlen(grShort) <= 20) {
+          for (i = 0; i <  28-strlen(grShort); i ++ )
+             { 
+                printf("%s", " " );
+             }
+           }
+         printf("%-10s    %s<BR>", diseaseID, diseaseName);
+        printf("</PRE>");
+    }  /* end while */
+
+ printf("<BR>");
+ printTrackHtml(tdb);
+ hFreeConn(&conn);
+
+
+} /* end of doGeneReviews */
 
 void doMiddle()
 /* Generate body of HTML. */
 {
 char *track = cartString(cart, "g");
 char *item = cartOptionalString(cart, "i");
 char *parentWigMaf = cartOptionalString(cart, "parentWigMaf");
 struct trackDb *tdb = NULL;
 
 
 if (hIsGisaidServer())
     {
     validateGisaidUser(cart);
     }
 
@@ -24963,30 +25019,34 @@
     {
     doT2gDetails(tdb, item);
     }
 else if (tdb != NULL && startsWith("bedDetail", tdb->type))
     {
     doBedDetail(tdb, NULL, item);
     }
 else if (startsWith("numtS", table))
     {
     doNumtS(tdb, item);
     }
 else if (startsWith("cosmic", table))
     {
     doCosmic(tdb, item);
     }
+else if (startsWith("geneReviews", table))
+    {
+    doGeneReviews(tdb, item);
+    }
 else if (tdb != NULL)
     {
     genericClickHandler(tdb, item, NULL);
     }
 else
     {
     cartWebStart(cart, database, "%s", track);
     printf("Sorry, clicking there doesn't do anything yet (%s).", track);
     }
 /* End of 1000+ line dispatch on table involving 100+ if/elses. */
 
 if (didCartHtmlStart)
     cartHtmlEnd();
 }