f9e3913d0a717429adb9e7ce395a80886e1253f0
chinhli
  Fri Sep 23 09:33:55 2011 -0700
Finished geneReviews for hg19 and hg18
diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c
index 9f6a55a..f7921d4 100644
--- src/hg/hgc/hgc.c
+++ src/hg/hgc/hgc.c
@@ -23838,96 +23838,30 @@
                hgTracksPathAndSettings(), database,
                bed->chrom, bed->chromStart+1, bed->chromEnd);
 
         printf("%-20s %-10s %9d  %9d    %5d    %5d    %1s",
             bed->name, bed->chrom, bed->chromStart+1, bed->chromEnd,
             (bed->chromEnd - bed->chromStart),bed->score, bed->strand);
 
         printf("</TT></PRE>");
         }
 
  printf("<BR>");
  printTrackHtml(tdb);
  hFreeConn(&conn);
 }
 
-void doGeneReviews(struct trackDb *tdb, char *itemName)
-/* generate the detail page for geneReviews */
-{
-struct sqlConnection *conn = hAllocConn(database);
-//char *table = tdb->table;
-int start = cartInt(cart, "o");
-int num = 4;
-
- genericHeader(tdb, itemName);
- genericBedClick(conn, tdb, itemName, start, num);
- prGeneReviews(conn, itemName);
- printf("<BR>");
- printTrackHtml(tdb);
- hFreeConn(&conn);
-}
-
-void prGeneReviews(struct sqlConnection *conn, char *itemName)
-/* print GeneReviews associated to this item 
-   Note: this print function has been replaced by addGeneReviewToBed.pl
-         which print the same information to the field 5 of bigBed file
-*/ 
-         
-{
-struct sqlResult *sr;
-char **row;
-char query[512];
-int i;
-char *clickMsg = "Click link(s) below to search GeneReviews and GeneTests";
-boolean firstTime = TRUE;
-
-safef(query, sizeof(query), "select  grShort, diseaseID, diseaseName from geneReviewsRefGene where geneSymbol='%s'", itemName);
-sr = sqlGetResult(conn, query);
-while ((row = sqlNextRow(sr)) != NULL)
-    {
-        char *grShort = *row++;
-        char *diseaseID = *row++;
-        char *diseaseName = *row++;
-
-
-        if (firstTime)
-        {
-          printf("<BR><B> GeneReview(s) available for %s:</B> (%s)<BR>",itemName,clickMsg);
-          firstTime = FALSE;
-          printf("<PRE><TT>"); 
-              // #1234567890123456789012345678901234567890
-          printf("Short name    Disease ID     GeneTests disease name<BR>");
-          printf("-----------------------------------------------------------");
-          printf("-----------------------------------------------------------");  
-          printf("----------------------------------<BR>");
-        }      
-        printf("<A HREF=\"http://www.ncbi.nlm.nih.gov/books/n/gene/%s\" TARGET=_blank><B>%s</B></A>", grShort, grShort);
-        if (strlen(grShort) <= 15) {
-          for (i = 0; i <  15-strlen(grShort); i ++ )
-             { 
-                printf("%s", " " );
-             }
-           } 
-         printf("%-10s    ", diseaseID);
-        printf("<A HREF=\"http://www.ncbi.nlm.nih.gov/sites/GeneTests/review/disease/%s?db=genetests&search_param==begins_with\" TARGET=_blank><B>%s</B></A><BR>", diseaseName, diseaseName);
-
-    }  /* end while */
- printf("</TT></PRE>");
- //printf("<BR>");
- sqlFreeResult(&sr);
-} /* end of prGeneReviews */
-
 void prGRShortRefGene(char *itemName)
 /* print GeneReviews short label associated to this refGene item */
 {
 struct sqlConnection *conn  = hAllocConn(database);
 struct sqlResult *sr;
 char **row;
 char query[512];
 boolean firstTime = TRUE;
 
 safef(query, sizeof(query), "select grShort, diseaseName from geneReviewsRefGene where geneSymbol='%s'", itemName);
 sr = sqlGetResult(conn, query);
 while ((row = sqlNextRow(sr)) != NULL)
     {
         char *grShort = *row++;
         char *diseaseName = *row++;
@@ -25158,34 +25092,30 @@
     {
     doT2gDetails(tdb, item);
     }
 else if (tdb != NULL && startsWith("bedDetail", tdb->type))
     {
     doBedDetail(tdb, NULL, item);
     }
 else if (startsWith("numtS", table))
     {
     doNumtS(tdb, item);
     }
 else if (startsWith("cosmic", table))
     {
     doCosmic(tdb, item);
     }
-else if (sameString("geneReviews", table))
-    {
-    doGeneReviews(tdb, item);
-    }
 else if (tdb != NULL)
     {
     genericClickHandler(tdb, item, NULL);
     }
 else
     {
     cartWebStart(cart, database, "%s", track);
     printf("Sorry, clicking there doesn't do anything yet (%s).", track);
     }
 /* End of 1000+ line dispatch on table involving 100+ if/elses. */
 
 if (didCartHtmlStart)
     cartHtmlEnd();
 }