950ff822fc5996b8049791efa4e439dd02f4108f
fanhsu
  Fri Sep 23 08:49:13 2011 -0700
Cleaned out some debugging statements like fflush() etc.
diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c
index 21e9228..6ab25ee 100644
--- src/hg/hgc/hgc.c
+++ src/hg/hgc/hgc.c
@@ -8849,39 +8849,39 @@
 if ((row = sqlNextRow(sr)) == NULL)
     errAbort("Couldn't find %s in omimSubField table - database inconsistency.", avName);
 else
     {
     avDescStartPos = cloneString(row[0]);
     avDescLen	   = cloneString(row[1]);
     iAvDescStartPos = atoi(avDescStartPos);
     iAvDescLen      = atoi(avDescLen);
     }
 sqlFreeResult(&sr);
 
 lf = lineFileOpen("/gbdb/hg17/omim/omim.txt", TRUE);
 lineFileSeek(lf,(size_t)(iAvDescStartPos), 0);
 lineFileNext(lf, &line, &lineSize);
 printf("<h4>");
-printf(".%s %s ", avSubFdId, line);fflush(stdout);
+printf(".%s %s ", avSubFdId, line);
 lineFileNext(lf, &line, &lineSize);
-printf("[%s]\n", line);fflush(stdout);
+printf("[%s]\n", line);
 printf("</h4>");
 
 while ((lf->lineStart + lf->bufOffsetInFile) < (iAvDescStartPos + iAvDescLen))
     {
     lineFileNext(lf, &line, &lineSize);
-    printf("%s\n", line);fflush(stdout);
+    printf("%s\n", line);
     }
 
 htmlHorizontalLine();
 
 printTrackHtml(tdb);
 hFreeConn(&conn);
 }
 
 void doRgdQtl(struct trackDb *tdb, char *item)
 /* Put up RGD QTL info. */
 {
 struct sqlConnection *conn = hAllocConn(database);
 char query[256];
 struct sqlResult *sr;
 char **row;
@@ -9268,38 +9268,35 @@
       "select sum(mutated_samples) from cosmicRaw where cosmic_mutation_id='%s'",
       itemName);
 
     sr2 = sqlMustGetResult(conn2, query2);
     row2 = sqlNextRow(sr2);
     if (row2 != NULL)
     	{
     	printf("<BR><BR><B>Total Mutated Samples:</B> %s\n", row2[0]);
 	//printf("<br>%s ", row2[0]);
 	}
     sqlFreeResult(&sr2);
     
     safef(query2, sizeof(query2), 
       "select sum(examined_samples) from cosmicRaw where cosmic_mutation_id='%s'",
       itemName);
-//printf("<br>%s\n", query2);fflush(stdout);
     sr2 = sqlMustGetResult(conn2, query2);
     row2 = sqlNextRow(sr2);
     if (row2 != NULL)
     	{
     	printf("<BR><B>Total Examined Samples:</B> %s\n", row2[0]);
-	//printf("%s", row2[0]);
-	//fflush(stdout);
 	}
     sqlFreeResult(&sr2);
     safef(query2, sizeof(query2), 
       "select sum(mutated_samples)*100/sum(examined_samples) from cosmicRaw where cosmic_mutation_id='%s'",
       itemName);
     sr2 = sqlMustGetResult(conn2, query2);
     row2 = sqlNextRow(sr2);
     if (row2 != NULL)
     	{
     	char *chp;
 	chp = strstr(row2[0], ".");
 	if ((chp != NULL) && (strlen(chp) > 3))
 	   {
 	   chp++;
 	   chp++;
@@ -9382,31 +9379,31 @@
 row = sqlNextRow(sr);
 if (row != NULL)
     {
     printf("<BR><B>UCSC Canonical Gene(s) in this genomic region: </B><UL>");
     while (row != NULL)
     	{
 	safef(query2, sizeof(query2),
         "select geneSymbol, kgId, description from kgXref where kgId ='%s'", row[0]);
 	sr2 = sqlMustGetResult(conn2, query2);
 	row2 = sqlNextRow(sr2);
 	if (row2 != NULL)
     	    {
 	    printf("<LI>");
             printf("<A HREF=\"%s%s\" target=_blank>","./hgGene\?hgg_chrom=none&hgg_gene=", row2[1]);
             printf("%s (%s)</A> ", row2[0], row2[1]);
-	    printf(" %s", row2[2]);fflush(stdout);
+	    printf(" %s", row2[2]);
 	    }
         sqlFreeResult(&sr2);
 	row = sqlNextRow(sr);
 	}
     sqlFreeResult(&sr);
     printf("</UL>");
     }
 hFreeConn(&conn);
 hFreeConn(&conn2);
 }
 
 void doDecipher(struct trackDb *tdb, char *item, char *itemForUrl)
 /* Put up DECIPHER track info. */
 {
 genericHeader(tdb, item);
@@ -9503,31 +9500,31 @@
 	else
     	    {
 	    /* get gene symbol from kgXref if the entry is not in morbidmap and omim genemap */
     	    safef(query, sizeof(query), "select geneSymbol from kgXref where kgId='%s';", kgId);
 
             sr = sqlMustGetResult(conn, query);
     	    row = sqlNextRow(sr);
     	    if (row != NULL)
     	    	{
  	    	printf("<B>UCSC Gene Symbol:</B> %s", row[0]);
 	    	printf("<BR>\n");
 	    	}
     	    sqlFreeResult(&sr);
     	    }
 	}
-    printf("<B>OMIM Database ");fflush(stdout);
+    printf("<B>OMIM Database ");
     printf("<A HREF=\"%s%s\" target=_blank>", url, itemName);
     printf("%s</A></B>", itemName);
 
     safef(query, sizeof(query),
     	  "select title1, title2 from omimGeneMap where omimId=%s;", itemName);
     sr = sqlMustGetResult(conn, query);
     row = sqlNextRow(sr);
     if (row != NULL)
     	{
 	if (row[0] != NULL)
 	    {
 	    title1 = cloneString(row[0]);
     	    printf(": %s", title1);
 	    }
 	if (row[1] != NULL)
@@ -9613,31 +9610,31 @@
 char query[256];
 struct sqlResult *sr;
 char **row;
 char *url = tdb->url;
 char *title1 = NULL;
 char *title2 = NULL;
 char *geneSymbol = NULL;
 char *chrom, *chromStart, *chromEnd;
 
 chrom      = cartOptionalString(cart, "c");
 chromStart = cartOptionalString(cart, "o");
 chromEnd   = cartOptionalString(cart, "t");
 
 if (url != NULL && url[0] != 0)
     {
-    printf("<B>OMIM: ");fflush(stdout);
+    printf("<B>OMIM: ");
     printf("<A HREF=\"%s%s\" target=_blank>", url, itemName);
     printf("%s</A></B>", itemName);
     safef(query, sizeof(query),
     	  "select title1, title2 from omimGeneMap where omimId=%s;", itemName);
     sr = sqlMustGetResult(conn, query);
     row = sqlNextRow(sr);
     if (row != NULL)
     	{
 	if (row[0] != NULL)
 	    {
 	    title1 = cloneString(row[0]);
     	    printf(" %s", title1);
 	    }
 	if (row[1] != NULL)
 	    {
@@ -9793,31 +9790,31 @@
 char *title2 = NULL;
 char *geneSymbol = NULL;
 char *chrom, *chromStart, *chromEnd;
 char *kgDescription = NULL;
 char *refSeq;
 char *omimId;
 
 chrom      = cartOptionalString(cart, "c");
 chromStart = cartOptionalString(cart, "o");
 chromEnd   = cartOptionalString(cart, "t");
 
 omimId = itemName;
 
 if (url != NULL && url[0] != 0)
     {
-    printf("<B>OMIM: ");fflush(stdout);
+    printf("<B>OMIM: ");
     printf("<A HREF=\"%s%s\" target=_blank>", url, itemName);
     printf("%s</A></B>", itemName);
     safef(query, sizeof(query),
     	  "select title1, title2 from omimGeneMap where omimId=%s;", itemName);
     sr = sqlMustGetResult(conn, query);
     row = sqlNextRow(sr);
     if (row != NULL)
     	{
 	if (row[0] != NULL)
 	    {
 	    title1 = cloneString(row[0]);
     	    printf(": %s", title1);
 	    }
 	if (row[1] != NULL)
 	    {
@@ -10114,31 +10111,30 @@
 
     if (!sameWord(dbSnpId, "-"))
     	{
     	printf("<B>dbSNP:</B> \n");
     	if (sameWord(database, "hg18"))
 	    {
 	    printf("<A HREF=\"%s%s\" >",
 	       "../cgi-bin/hgc?g=snp130&i=", dbSnpId);
 	    }
 	else
 	    {
     	    printf("<A HREF=\"%s%s\" >",
 	       "../cgi-bin/hgc?g=snp132&i=", dbSnpId);
 	    }
     	printf("%s</A></B>", dbSnpId);
-	fflush(stdout);
 	}
     }
 
 printf("<HR>");
 printPosOnChrom(chrom, atoi(chromStart), atoi(chromEnd), NULL, FALSE, itemName);
 }
 
 void doOmimAvSnp(struct trackDb *tdb, char *item)
 /* Put up OmimGene track info. */
 {
 genericHeader(tdb, item);
 printOmimAvSnpDetails(tdb, item, FALSE);
 printTrackHtml(tdb);
 }