File Changes for hiram

v257_base to v258_preview (2011-09-19 to 2011-09-27) v258

• src/hg/hgGene/hgGeneData/S_cerevisiae/sacCer2/otherOrgs.ra
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    danRer6 becomes danRer7
• src/hg/makeDb/doc/anoCar2.txt
  • lines changed 73, context: html, text, full: html, text
    starting xenTro3 lastz
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    running lastz xenTro3 vs. these others
• src/hg/makeDb/doc/danRer7.txt
  • lines changed 57, context: html, text, full: html, text
    running lastz xenTro3 vs. these others
• src/hg/makeDb/doc/galGal3.txt
  • lines changed 56, context: html, text, full: html, text
    running lastz xenTro3 vs. these others
• src/hg/makeDb/doc/hg19.txt
  • lines changed 56, context: html, text, full: html, text
    running lastz xenTro3 vs. these others
• src/hg/makeDb/doc/melGal1.txt
  • lines changed 53, context: html, text, full: html, text
    starting xenTro3 lastz
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    xenTro3 lastz finished
• src/hg/makeDb/doc/mm9.txt
  • lines changed 54, context: html, text, full: html, text
    running lastz xenTro3 vs. these others
• src/hg/makeDb/doc/monDom5.txt
  • lines changed 57, context: html, text, full: html, text
    starting lastz on xenTro3
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    done with lastz chain net runs for xenTro3
• src/hg/makeDb/doc/rn4.txt
  • lines changed 37, context: html, text, full: html, text
    starting lastz on xenTro3
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    xenTro3 lastz chain net completed
• src/hg/makeDb/doc/xenTro2.txt
  • lines changed 18, context: html, text, full: html, text
    adding liftOver to xenTro3
• src/hg/makeDb/doc/xenTro3.txt
  • lines changed 2, context: html, text, full: html, text
    adding ending marker after section
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    running lastz xenTro3 vs. these others
  • lines changed 71, context: html, text, full: html, text
    done with lastz chain net runs for xenTro3
• src/hg/makeDb/trackDb/trackDb.chainNet.ra
  • lines changed 51, context: html, text, full: html, text
    adding xenTro3 chain net
• src/hg/makeDb/trackDb/turkey/melGal1/trackDb.ra
  • lines changed 17, context: html, text, full: html, text
    better searches for gold and ctgPos2 tables
• src/hg/makeDb/trackDb/xenTro/xenTro3/trackDb.ra
  • lines changed 10, context: html, text, full: html, text
    better gold fragment name search
  • lines changed 1, context: html, text, full: html, text
    allow ctgPos2 search to find the chrM contig name too
• src/hg/utils/automation/checkBlastTabs.sh
  • lines changed 98, context: html, text, full: html, text
    initial source checks all dbs blast tabs
• src/product/README.trackDb
  • lines changed 7, context: html, text, full: html, text
    clarify the relationship between db table name and track definition in the .ra file