File Changes for hiram

v258_preview to v258_preview2 (2011-09-27 to 2011-10-04) v258

• src/hg/htdocs/images/phylo/xenTro3_9way.png
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    initial diagram for xenTro3 9-way alignment
• src/hg/makeDb/doc/melGal1.txt
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    rerun xenTro3 lastz with parameters that produce a bit more coverage
• src/hg/makeDb/doc/sacCer3.txt
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    note about phyloBoot never finishing
• src/hg/makeDb/doc/xenTro3.txt
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    repeat the melGal1 alignment and start the 9-way
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    have 9-way multiz with gene and gap annotations
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    done with 4D site tree estimate
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    phastCons done for 9-way
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    phyloP done for 9-way and working on downloads
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    done with 9-way alignment
• src/hg/makeDb/trackDb/cow/bosTau6/trackDb.ra
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    add search rules for gold and ctgPos2
• src/hg/makeDb/trackDb/xenTro/xenTro3/cons9way.html
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    initial contents copied from anoCar2 and updated for xenTro3
• src/hg/makeDb/trackDb/xenTro/xenTro3/trackDb.ra
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    adding cons9way