115581e372fbd7455be600140418dcf5219fe9d4 rhead Fri Sep 30 11:47:46 2011 -0700 Implicating Brian in addition to Mark for gbSanity problems. diff --git src/utils/qa/doGenbankTests src/utils/qa/doGenbankTests index 5f58f87..8f25e7c 100755 --- src/utils/qa/doGenbankTests +++ src/utils/qa/doGenbankTests @@ -173,31 +173,32 @@ cmd="nice featureBits -countGaps $db $table gap" echo $cmd $cmd || allOk=no echo } done echo # run gbSanity filename=${db}.sanity.$(date +%m-%d-%Y.%R%p) echo -e "--> Running gbSanity, and putting output in:" echo -e "${HOST}:$sanityPath/misc/$filename" # need to run in a subshell, since gbSanity wants to be run from this dir (cd $sanityPath && bin/x86_64/gbSanity $db >& misc/$filename) || allOk=no echo -e "The last line of the gbSanity output gives a summary of errors. -Here is the last line of the file. If there are errors, consult Mark Diekhans:\n" +Here is the last line of the file. If there are errors, consult Mark Diekhans +and Brian Raney:\n" tail -1 $sanityPath/misc/$filename echo # run countPerChrom?? # give overall report of errors if [ $allOk = yes ] then echo No errors were encountered during $(basename $0). Yay! date else echo "There was an ERROR in at least one test, but $(basename $0) ran successfully." date exit 2 fi