2f17667d6ee25259d2d438f78f618456d63cbdf3 rhead Tue Sep 27 11:30:14 2011 -0700 Got rid of annoying rm error with a hacky redirect to /dev/null. diff --git src/utils/qa/checkGbdbDiffs.csh src/utils/qa/checkGbdbDiffs.csh index cbe4ae8..fc49ec1 100755 --- src/utils/qa/checkGbdbDiffs.csh +++ src/utils/qa/checkGbdbDiffs.csh @@ -1,75 +1,77 @@ #!/bin/tcsh source `which qaConfig.csh` #################### # 06-20-05 Bob Kuhn # # Script to check /gbdb files that might have been lost after reboot. # #################### set filePath="" set db="" set errFlag=0 set mode="" set debug="true" set debug="false" if ($#argv != 1) then echo echo " script to check for missing /gbdb files after reboot." echo " uses existing list of /gbdb files - in dev:qa/test-results." echo echo ' usage: go|override' echo ' where "override" regenerates the file for today' echo exit endif set mode=$argv[1] if ($mode != "go" && $mode != "override") then echo '\n the only way to run this is to use "go" or "override" \ on the command line.' echo "\n${0}:" $0 exit 0 endif set todayDate=`date +%Y%m%d` set outpath="/usr/local/apache/htdocs-genecats/qa/test-results/gbdb" set urlpath="http://genecats.cse.ucsc.edu/qa/test-results/gbdb" # get the two files to compare or create if none for today if ($mode == "override" ) then rm -f $outpath/gbdb.all.$todayDate endif if (! -e $outpath/gbdb.all.$todayDate) then ssh hgwbeta find /gbdb -type f -print | sort > $outpath/gbdb.all.$todayDate endif set twoFiles=`ls -ltr $outpath | grep all | tail -2 | awk '{print $NF}'` set file1=`echo $twoFiles | awk '{print $1}'` set file2=`echo $twoFiles | awk '{print $2}'` echo "files: $file1 $file2\n" > $outpath/gbdbDiff.$todayDate diff $outpath/$file1 $outpath/$file2 >> $outpath/gbdbDiff.$todayDate if ( $status ) then set lost=`grep "<" $outpath/gbdbDiff.$todayDate | wc -l` set new=`grep ">" $outpath/gbdbDiff.$todayDate | wc -l` echo echo " $lost files lost" echo " $new new files" echo " see: $urlpath/gbdbDiff.$todayDate" echo else rm -f $outpath/gbdbDiff.$todayDate echo "\n files match: $file1 $file2\n" endif # remove files a year old set lastYear=`getMonthLastYear.csh go | sed "s/-//"` -rm -f $outpath/gbdb*${lastYear}* +# throw away output below because rm complains about no match for +# the globbing character during most of the month +rm -f $outpath/gbdb*${lastYear} >& /dev/null exit