| " " " "" " | " "
|---|
| No Track Hubs for this genome assembly |
| No Unlisted Track Hubs |
| %d Track Hubs for other genome assemblies: %s |
| Display | " "Hub Name | " "Description | " + "Assemblies | " "URL | " "
|---|---|---|---|---|
| ERROR: %s " "Debug | ", errorMessage); + ourPrintCell(removeLastComma(dbList)); ourPrintCell(url); } - } sqlFreeResult(&sr); if (gotAnyRows) { printf("
clearing hub %s\n",url);
if (url != NULL)
hubClearStatus(url);
else
errAbort("must specify url in %s\n", hgHubDataText);
printf("Completed\n");
}
static void doDisconnectHub(struct cart *theCart)
{
char *id = cartOptionalString(cart, "hubId");
if (id != NULL)
{
char buffer[1024];
safef(buffer, sizeof buffer, "hgHubConnect.hub.%s", id);
cartRemove(cart, buffer);
}
cartRemove(theCart, "hubId");
}
static void checkTrackDbs(struct hubConnectStatus *hubList)
{
struct hubConnectStatus *hub = hubList;
struct trackHub *trackHubList = NULL;
for(; hub; hub = hub->next)
{
struct errCatch *errCatch = errCatchNew();
if (errCatchStart(errCatch))
{
hubAddTracks(hub, database, &trackHubList);
}
errCatchEnd(errCatch);
if (errCatch->gotError)
{
hub->errorMessage = cloneString(errCatch->message->string);
hubUpdateStatus( errCatch->message->string, hub);
}
else
hubUpdateStatus(NULL, hub);
}
}
void doMiddle(struct cart *theCart)
/* Write header and body of html page. */
{
boolean gotDisconnect = FALSE;
cart = theCart;
setUdcCacheDir();
if (cartVarExists(cart, hgHubDoClear))
{
doClearHub(cart);
cartWebEnd();
return;
}
if (cartVarExists(cart, hgHubDoDisconnect))
{
gotDisconnect = TRUE;
doDisconnectHub(cart);
}
if (cartVarExists(cart, hgHubDoReset))
{
doResetHub(cart);
}
cartWebStart(cart, NULL, "%s", pageTitle);
jsIncludeFile("jquery.js", NULL);
jsIncludeFile("utils.js", NULL);
jsIncludeFile("jquery-ui.js", NULL);
webIncludeResourceFile("jquery-ui.css");
jsIncludeFile("ajax.js", NULL);
jsIncludeFile("hgHubConnect.js", NULL);
jsIncludeFile("jquery.cookie.js", NULL);
printf(" \n");
printf(
"Track data hubs are collections of tracks from outside of UCSC that "
"can be imported into the Genome Browser. To import a public hub check "
"the box in the list below. "
"After import the hub will show up as a group of tracks with its own blue "
"bar and label underneath the main browser graphic, and in the "
"configure page. For more information, see the "
""
"User's Guide.
\n"
"NOTE: Because Track Hubs are created and maintained by external sources,"
" UCSC cannot be held responsible for their content.
"
);
printf("\n");
-// figure out and print out genome name
-makeGenomePrint();
+getDbAndGenome(cart, &database, &organism, oldVars);
char *survey = cfgOptionEnv("HGDB_HUB_SURVEY", "hubSurvey");
char *surveyLabel = cfgOptionEnv("HGDB_HUB_SURVEY_LABEL", "hubSurveyLabel");
if (survey && differentWord(survey, "off"))
hPrintf("%s\n", survey, surveyLabel ? surveyLabel : "Take survey");
hPutc('\n');
// check to see if we have any new hubs
hubCheckForNew(database, cart);
// grab all the hubs that are listed in the cart
struct hubConnectStatus *hubList = hubConnectStatusListFromCartAll(cart);
checkTrackDbs(hubList);
// here's a little form for the add new hub button
printf("");
// this the form for the disconnect hub button
printf("");
// this the form for the reset hub button
printf("");
// ... and now the main form
if (cartVarExists(cart, hgHubConnectCgiDestUrl))
destUrl = cartOptionalString(cart, hgHubConnectCgiDestUrl);
printf("\n");
puts("");
cartWebEnd();
}
char *excludeVars[] = {"Submit", "submit", "hc_one_url",
hgHubDoReset, hgHubDoClear, hgHubDoDisconnect, hgHubDataText,
hgHubConnectRemakeTrackHub, NULL};
int main(int argc, char *argv[])
/* Process command line. */
{
oldVars = hashNew(10);
cgiSpoof(&argc, argv);
cartEmptyShell(doMiddle, hUserCookie(), excludeVars, oldVars);
return 0;
}