Commits for chinhli

v259_preview2 to v259_base (2011-11-01 to 2011-11-07) v259

• Set correct pub format for geneReviews
  • src/hg/makeDb/trackDb/human/geneReviews.html - lines changed 4, context: html, text, full: html, text
• sort the subgroup view, set default to dense
  • src/hg/makeDb/trackDb/human/hg19/lincRNAs.ra - lines changed 3, context: html, text, full: html, text
• add upstream file request for felCat4 and bosTau6
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 3, context: html, text, full: html, text
• Only do upstream of refGene for bosTau6
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
• Prefix shortLable with 'lincRNAs' eye-catcher for lincRNAs subtracks
  • src/hg/makeDb/trackDb/human/hg19/lincRNAs.ra - lines changed 8, context: html, text, full: html, text
• Finished hg19 lincRNAs track work.
  • src/hg/makeDb/doc/hg19.txt - lines changed 144, context: html, text, full: html, text
• Remove xlincRNAsTranscripts track form experiment group
  • src/hg/makeDb/trackDb/human/hg19/lincRNAs.ra - lines changed 11, context: html, text, full: html, text
• Finished genbank task for macEug2
  • src/hg/makeDb/doc/macEug2.txt - lines changed 25, context: html, text, full: html, text
• Set lincRNA RNA-Seq Reads track default display to dense only. Also use lincRNA instead of lincRNAs for track prefix.
  • src/hg/makeDb/trackDb/human/hg19/lincRNAs.html - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/lincRNAs.ra - lines changed 6, context: html, text, full: html, text
• Move lincRNAs track from Regulation group to Genes and gene Prediction Tracks group.
  • src/hg/makeDb/trackDb/human/hg19/lincRNAs.ra - lines changed 1, context: html, text, full: html, text
• Enable search on geneReviews track using either gene symbol or disease name
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 7, context: html, text, full: html, text