Commits for cline
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v259_preview2 to v259_base (2011-11-01 to 2011-11-07) v259
- (1) added a stanza for the Old UCSC Genes track, and dropped the priority for the Rfam development track. (2) Added to the UCSC Genes build script some of the related processing that's been in various places in hg19.txt. (3) Tried to remove some outdated all.joiner dependencies
- src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes13.csh - lines changed 29, context: html, text, full: html, text
- src/hg/makeDb/schema/all.joiner - lines changed 20, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 14, context: html, text, full: html, text
- Fixing a merge conflict
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 17, context: html, text, full: html, text
- Merging in some changes from hg19.txt that build files/tables used by isPcr, plus a UCSC Genes to kegg-locusLink table that seems to be used in the gene sorter
- src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes13.csh - lines changed 8, context: html, text, full: html, text
- Cleaning up the remnants of a merge conflict
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
- Adding back in some ancient UCSC Genes dependencies that I eagerly deleted last night, but that might not be fully crufty yet
- src/hg/makeDb/schema/all.joiner - lines changed 17, context: html, text, full: html, text
- To address Redmine #1118 and code review question #5839: repeated domain links. I changed the code so this problem wouldn't appear with SCOP, but forgot to change it for Pfam because I'd changed the data for Pfam (but only on hg19). Now I'm making the code change for Pfam too, replacing a SELECT with a SELECT DISTINCT
- Added instructions to the UCSC Genes build script for setting up isPcr. Moved the instructions farther down in the build script, to be executed when the build is about ready to go to QA
- src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes13.csh - lines changed 62, context: html, text, full: html, text
- Clarifying some dependencies relating to the updating of UCSC Genes tables
- src/hg/makeDb/schema/all.joiner - lines changed 3, context: html, text, full: html, text
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