Commits for braney

v258_base to v259_preview (2011-10-10 to 2011-10-25) v259

• added new CDS FASTA per Mary
  • src/hg/makeDb/doc/rn4.txt - lines changed 92, context: html, text, full: html, text
• run the table tests a little differently.
  • src/utils/qa/weeklybld/doHgTablesTestRobot.csh - lines changed 8, context: html, text, full: html, text
• re-redo the CDS FASTA alignments for the new new knownGene. per Melissa.
  • src/hg/makeDb/doc/hg19.txt - lines changed 11, context: html, text, full: html, text
• make code use loaded items from bigBeds, even if in dense mode. #418
  • src/hg/hgTracks/bedTrack.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text
• checking this in, though it's likely to change upon review from Greg.
  • src/hg/hgHubConnect/hgHubConnect.c - lines changed 68, context: html, text, full: html, text
• v259 preview1
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text