Commits for cricket
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v258_base to v259_preview (2011-10-10 to 2011-10-25) v259
- Small wording changes
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.html - lines changed 4, context: html, text, full: html, text
- Adding Chromatin Intereactions and UW 5C to the downloads for release
- src/hg/htdocs/ENCODE/downloads.html - lines changed 10, context: html, text, full: html, text
- Staging UW 5C for public
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/makefile - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUw5C.ra - lines changed 766, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
- Changing long label
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.ra - lines changed 1, context: html, text, full: html, text
- Spelling out Univeristy
- src/hg/htdocs/ENCODE/downloads.html - lines changed 1, context: html, text, full: html, text
- Staging UW Dnase hg18 to beta
- src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeUwDnaseSeq.ra - lines changed 998, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- Changing a few spelling errors and the link to hgdownload-test
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.new.html - lines changed 3, context: html, text, full: html, text
- Releaseing UW Dnase Release 5 hg18
- src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeUwDnaseSeq.ra - lines changed 998, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.html - lines changed 24, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.ra - lines changed 2, context: html, text, full: html, text
- Staging for public SYDH Histone mini fix release
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeSydhHistone.ra - lines changed 94, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeSydhHistone.ra - lines changed 94, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.html - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.ra - lines changed 8, context: html, text, full: html, text
- Staging Duke Affy Exon release 2 for public
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeDukeAffyExon.ra - lines changed 156, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeDukeAffyExon.ra - lines changed 156, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.html - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.ra - lines changed 10, context: html, text, full: html, text
- Changing the release tags to be file wide and not stanza wide
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra - lines changed 35, context: html, text, full: html, text
- This is the final file for the release tag change for wgEncodeReg
- src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.new.ra - lines changed 343, context: html, text, full: html, text
- Removing old files
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwChIPSeq.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeYaleChIPseq.ra - lines changed 6, context: html, text, full: html, text
- Alphabetizing the makefiles
- src/hg/makeDb/trackDb/human/hg18/metaDb/beta/makefile - lines changed 35, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/public/makefile - lines changed 35, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/makefile - lines changed 43, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/makefile - lines changed 10, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/makefile - lines changed 5, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/public/makefile - lines changed 4, context: html, text, full: html, text
- This is more out of date than the .ra
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.new.ra - lines changed 1256, context: html, text, full: html, text
- Adding the explicit bam,bai
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra - lines changed 16, context: html, text, full: html, text
- Staging UW Dnase for public
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwDnase.ra - lines changed 654, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUwDnase.ra - lines changed 4672, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.html - lines changed 32, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra - lines changed 916, context: html, text, full: html, text
- I am trying to clean up these makefiles to be alphabetical so that they are consistent. I am also removing metaData that has been replaced on public (Gencode is now Gencode4)
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 26, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeGencode.ra - lines changed 99, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/makefile - lines changed 43, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeGencode.ra - lines changed 99, context: html, text, full: html, text
- Moving geoSample to geoSampleAccession, Caltech(Wold) to Caltech and a few view changes, also worked on the commented out fileSortOrder in case we ever want to use it
- src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeCaltechRnaSeq.ra - lines changed 856, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeCaltechRnaSeq.ra - lines changed 856, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.ra - lines changed 2, context: html, text, full: html, text
- A bunch of small changes on HaibMethyl450, in prgress
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra - lines changed 103, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.ra - lines changed 70, context: html, text, full: html, text
- Checking in md5sums
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 268, context: html, text, full: html, text
- Updating objStatus for Chromatin map with expId and objStatus
- src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeChromatinMap.ra - lines changed 541, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeChromatinMap.ra - lines changed 541, context: html, text, full: html, text
- Adding new comments about the order of type of term
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 12, context: html, text, full: html, text
- some corrections for situations when not all tracks have certain objects
- python/programs/qaInit/qaInit - lines changed 8, context: html, text, full: html, text
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