fa1fd1e6225697d08803d99446cab7d4e0d549e9
vsmalladi
  Fri Oct 21 14:38:24 2011 -0700
Moved all python scripts from /python/programs to live in sr/hg/encode as per Kate's request for all encode programs in a common place.
diff --git python/programs/qaUpdateMetadata/qaUpdateMetadata python/programs/qaUpdateMetadata/qaUpdateMetadata
deleted file mode 100755
index a2cee40..0000000
--- python/programs/qaUpdateMetadata/qaUpdateMetadata
+++ /dev/null
@@ -1,82 +0,0 @@
-#!/hive/groups/encode/dcc/bin/python
-import sys, os, re, argparse, subprocess, math
-from ucscgenomics import ra, track
-
-def addChange(changelist, obj, change):
-	if obj not in changelist:
-		changelist[obj] = list()
-	changelist[obj].append(change)
-	return changelist
-	
-
-def main():
-	parser = argparse.ArgumentParser(
-		prog='qaUpdateMetadata',
-		description='Update a metaDb fix',
-		epilog='example: qaUpdateMetadata hg19 wgEncodeUwDnaseSeq --list "md5sum objType cell treatment"'
-		)
-	parser.add_argument('-t', '--trackPath', help='Overrides the default track path ~/kent/src/hg/makeDb/trackDb/')
-	parser.add_argument('database', help='The database, typically hg19 or mm9')
-	parser.add_argument('composite', help='The composite name, wgEncodeCshlLongRnaSeq for instance')
-	parser.add_argument('vars', metavar='VARS', type=str, nargs='+', help='The list of metadata variables to update from alpha to beta')
-	
-	args = parser.parse_args(sys.argv[1:])
-	vars = args.vars
-
-
-	
-	c = track.CompositeTrack(args.database, args.composite)
-	newMdb = c.alphaMetaDb
-	oldMdb = c.betaMetaDb
-	
-	
-	commonStanzas = set(newMdb.filter(lambda s: 1, lambda s: s['metaObject'])) & set(oldMdb.filter(lambda s: 1, lambda s: s['metaObject']))
-	
-	changelist = dict()
-	
-	for i in sorted(commonStanzas):
-		#print oldMdb[i]
-		for j in vars:
-			if j not in newMdb[i]:
-				if j in oldMdb[i]:
-					changelist = addChange(changelist, i, "deleted %s" % j)
-					del oldMdb[i][j]
-					continue
-				else:
-					continue
-			if j not in oldMdb[i]:
-				changelist = addChange(changelist, i, "added %s = %s" % (j, newMdb[i][j]))
-				oldMdb[i][j] = newMdb[i][j]
-				continue
-			elif oldMdb[i][j] != newMdb[i][j]:
-				changelist = addChange(changelist, i, "changed %s from %s to %s" % (j, oldMdb[i][j], newMdb[i][j]))
-				oldMdb[i][j] = newMdb[i][j]
-
-	
-	for i in sorted(changelist):
-		print i
-		for j in changelist[i]:
-			pass
-			print j
-		print ""
-		
-
-	f = open(c._betaMdbPath, 'w')
-	magic = ""
-	for i in sorted(oldMdb):
-		if re.search('MAGIC', i):
-			magic = i
-			continue
-		f.write("metaObject " + str(oldMdb[i]['metaObject'] + "\n"))
-		del oldMdb[i]['metaObject']
-		f.write("objType " + str(oldMdb[i]['objType'] + "\n"))
-		del oldMdb[i]['objType']
-		for j in sorted(oldMdb[i]):
-			f.write(("%s %s" % (j, oldMdb[i][j])) + "\n")
-		f.write("\n")
-	magic = magic + "\n"	
-	f.write(magic)
-	f.close
-	
-if __name__ == '__main__':
-	main()