79be1509aaad079416063eee4bc5ee9131ba6579 wong Fri Oct 21 11:38:15 2011 -0700 added some attributes for testing diff --git python/lib/ucscgenomics/track.py python/lib/ucscgenomics/track.py index 8f3e787..60216f2 100644 --- python/lib/ucscgenomics/track.py +++ python/lib/ucscgenomics/track.py @@ -276,24 +276,27 @@ if database in organisms: self._organism = organisms[database] else: raise KeyError(database + ' is not a valid database') if not self._trackPath.endswith('/'): self._trackPath = self._trackPath + '/' self._trackDbPath = self._trackPath + self._organism + '/' + database + '/' + compositeName + '.ra' if not os.path.isfile(self._trackDbPath): raise KeyError(self._trackDbPath + ' does not exist') self._alphaMdbPath = self._trackPath + self._organism + '/' + database + '/metaDb/alpha/' + compositeName + '.ra' self._betaMdbPath = self._trackPath + self._organism + '/' + database + '/metaDb/beta/' + compositeName + '.ra' self._publicMdbPath = self._trackPath + self._organism + '/' + database + '/metaDb/public/' + compositeName + '.ra' + self._alphaMdbDir = self._trackPath + self._organism + '/' + database + '/metaDb/alpha/' + self._betaMdbDir = self._trackPath + self._organism + '/' + database + '/metaDb/beta/' + self._publicMdbDir = self._trackPath + self._organism + '/' + database + '/metaDb/public/' self._downloadsDirectory = '/hive/groups/encode/dcc/analysis/ftp/pipeline/' + database + '/' + compositeName + '/' self._httpDownloadsPath = '/usr/local/apache/htdocs-hgdownload/goldenPath/' + database + '/encodeDCC/' + compositeName + '/' self._rrHttpDir = '/usr/local/apache/htdocs/goldenPath/' + database + '/encodeDCC/' + compositeName + '/' self._notesDirectory = os.path.expanduser("~/kent/src/hg/makeDb/doc/encodeDcc%s" % database.capitalize()) + '/' self._url = 'http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=' + database + '&g=' + compositeName self._database = database self._name = compositeName self._md5path = '/hive/groups/encode/dcc/analysis/ftp/pipeline/' + database + '/' + compositeName + '/md5sum.txt'