Commits for angie

Track #34 (dbVar/ISCA): added isca% to tablesIgnored $hg.
- src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
MLQ #5795 (question mark in repeats table): user asked about the ?'s thatappear at the end of some repClass and repFamily names in rmsk. I asked Robert Hubley and he said they are just an indication that a new repeat is suspected to be in some class but hasn't been confirmed yet. He suggested ignoring the ?. I looked at rmskTrack.c and found that the ? at end was causing such items to default to the Other category. This change strips a trailing ? from the class name that we look up in the hash (but leaves it in the ro.repClass field because that's used for the mouseover title). Now if repClass is "DNA?" the item will still be drawn in the DNA row.
- src/hg/hgTracks/rmskTrack.c - lines changed 9, context: html, text, full: html, text
Adding new UCSC exception flag for dbSNP: InconsistentAlleles (the setof alleles for which frequencies are given does not match the set of observed alleles). This is in response to Ben and Ngan's finding some inconsistencies, and MLQ #5794 in which a user reported some strange non-base characters used as alleles for allele frequencies. Sent a couple test cases of inconsistent bases to dbSNP, and when build 135 FTP files are available, I can send them a more comprehensive list.
- src/hg/snp/snpLoad/snpNcbiToUcsc.c - lines changed 38, context: html, text, full: html, text