554af9e10ba4647f5f961f08abe3f9fb118b99da
cricket
  Fri Oct 28 15:08:59 2011 -0700
added timeout to error message
diff --git python/lib/ucscgenomics/qa.py python/lib/ucscgenomics/qa.py
index 4cc9dc3..54eb401 100644
--- python/lib/ucscgenomics/qa.py
+++ python/lib/ucscgenomics/qa.py
@@ -241,31 +241,31 @@
 		while p.poll() is None:
 			time.sleep(0.1)
 			now = datetime.datetime.now()
 			if (now - start).seconds > timeout:
 				p.kill()
 				killed = 1
 		if not killed:
 			cmdoutput = p.stdout.read()
 			cmderr = p.stderr.read()
 			
 			if cmdoutput:
 				results.append(cmdoutput)
 			if cmderr:
 				results.append(cmderr)
 		elif killed:
-			results.append("Process timeout for table: %s" % i)
+			results.append("Process timeout after %d seconds, for table: %s" % (timeout, i))
 			results.append("You might want to manually run: '%s'" % cmd)
 			results.append("")
 		
 	if results:
 		output.append("These tables have coordinate errors:")
 		for i in results:
 			output.append(i)
 	else:
 		output.append("No coordinate errors")
 		output.append("")
 	return (output, results)
 
 def positionalTblCheck(database, tables):
 	notgbdbtablelist = tables - getGbdbTables(database, tables)
 	results = []